View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13416_high_1 (Length: 425)
Name: NF13416_high_1
Description: NF13416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13416_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 2145480 - 2145201
Alignment:
| Q |
10 |
aagaatatgaaagcacaattagagtcagaaaagggagcaatatcaatgattgatagaaacacatgcataatgataccaggtaacgactttacaaaataaa |
109 |
Q |
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| T |
2145480 |
aagaaaatgaaagcacaattggagtcagaaaagggagcaataacaatgattgatagaaacacatgcataatgataccaggtaatgactttacaaaataaa |
2145381 |
T |
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| Q |
110 |
acatatatgcataaaggtaacaagaatctttgtgaaatattgctagggcctagctcaaatctcctaagtggtnnnnnnnnnnaacatgttatattcttga |
209 |
Q |
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| T |
2145380 |
acatatatgcataagggtaacaagaatctttgtgaaatattgctagggcctagctaaaatctcctaagtgg-------ggggaacatgttatattcttga |
2145288 |
T |
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| Q |
210 |
gaatgaaataagcaagtactccaatattgaagattatagttaagcaagtgaactatgatgtatggtaagagtttgatcttataattg |
296 |
Q |
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| T |
2145287 |
gaatgaaataagcaagtactccaatattgaagattatagttaagcaagtggtctatgatgtatggtaagagtttgatctcataattg |
2145201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 2145205 - 2145132
Alignment:
| Q |
334 |
aattgatcataattagtgatactttattaaataacgatttctcaattttttgaaaaatatatattggagttatg |
407 |
Q |
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| T |
2145205 |
aattgatcataattagtgatactttaataaataacgatttctcaattttttgaaaaatatatattggagttatg |
2145132 |
T |
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