View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13416_high_2 (Length: 245)
Name: NF13416_high_2
Description: NF13416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13416_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2145474 - 2145703
Alignment:
| Q |
1 |
ttttcttggggaccaatggtgggtcatcattgatgaggctttagtaatggctatttattagtgtcactaacaatacgttcaacatgcttcatagaaggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2145474 |
ttttcttggggaccaatggtgggtcatcattgatgaggctttagtaatggctatttattagtgtcactaacaatacgttcaacatgcttcatagaaggta |
2145573 |
T |
|
| Q |
101 |
tattattgaaaatttattggagtctccaattgtcatggtctttcaattaagcaatgcatatgtggccaaattcattttatgagctagtttttaagagtgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2145574 |
tattattgaaaatttattggagtctccaattgtcatggtctttcaattaagcaatgcatatgtggccaaattcattttatgagctagtttttaagagtgg |
2145673 |
T |
|
| Q |
201 |
gatctaaattcatttcatggtatcagagct |
230 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
2145674 |
gatctaaatccatttcatggtatcagagct |
2145703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University