View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13417_high_1 (Length: 639)
Name: NF13417_high_1
Description: NF13417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13417_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 6 - 509
Target Start/End: Original strand, 45323294 - 45323797
Alignment:
| Q |
6 |
catcatcaaaacccaaaaactctttcaaaaccacactagccttatcattacctgataaaaacctaagaacctgcgccaaactcggcaaagccttcgctct |
105 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45323294 |
catcatcaaagcccaaaaactctttcaaaaccacactagccttatcattacctgataaaaacctaagaacctgcgccaaactcggcaaagccttcgctct |
45323393 |
T |
|
| Q |
106 |
aatcatagcactaacatcagaacaacgcttcaccaacacctaataacaccacattcccttcttcttcttcatccatagaattgacccctaaaggatcctt |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45323394 |
aatcatagcactaaaatcagaacaacgcttcaccaacacctaataacaccacattcccttcttcttcttcatccatagaattgacccctaaaggatcctt |
45323493 |
T |
|
| Q |
206 |
caacgaagtcaacgtattcaaaattagatcaactgccaaaagccttaaattcactttccctaaactcatcttcacagcatacttcacaaactcaatctaa |
305 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45323494 |
caacgaagtcaacatattcaaaattagatcaactgccaaaagccttaaattcactttccctaaactcatcttcacagcatacttcacaaactcaatctaa |
45323593 |
T |
|
| Q |
306 |
tcccccaaatccataaccctaacaacctccataataaaatcaacagccaatgctttatacctcggctcagctttatccggcgccttattcgccaaatacc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45323594 |
tcccccaaatccataaccctaacaacctccataataaaatcaacagccaatgctttatccctcggctcagctttatccggcgccttattcgccaaatacc |
45323693 |
T |
|
| Q |
406 |
tcggaaaattagccaacgctttcttcacaccattcgaacaatccctacccctactcaattttatagtatatatagttatgtagtagcattaattaagaaa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45323694 |
tcggaaaattagccaacgctttcttcacaccattcgaacaatccctacccctactcaattttgtagtatatatagttatgtagtagcattaattaagaaa |
45323793 |
T |
|
| Q |
506 |
taac |
509 |
Q |
| |
|
|||| |
|
|
| T |
45323794 |
taac |
45323797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 547 - 621
Target Start/End: Original strand, 45323836 - 45323910
Alignment:
| Q |
547 |
ccgaggtagtgtcatcaattgccatcaactttggaatcctacgcaacgatatatgtttttcggcgggaacattgg |
621 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45323836 |
ccgaggtagtgttatcaattgccatcaactttggaatcctacgcaaccatatatgtttttcggcgggaacattgg |
45323910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 6e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 6 - 443
Target Start/End: Original strand, 14239167 - 14239609
Alignment:
| Q |
6 |
catcatcaaaacccaaaaactctttcaaaaccacactagccttatcattacctgataaaaacctaagaacctgcgccaaactcggcaaagccttcgctct |
105 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||| | ||| || || | | | |
|
|
| T |
14239167 |
catcaccaaaacccataaactctttcaaaaccacactagccttttcactacctgataaaaacccaacaacctgcgccagagtcgacatcgctcgcccgcg |
14239266 |
T |
|
| Q |
106 |
aatcatagcactaacatcagaacaacgcttcaccaacacctaataacaccacattccc---------ttc--ttcttcttcatccatagaattgacccct |
194 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| ||| ||||||| || ||| ||| |||||| |||||| | ||||| |||||| |
|
|
| T |
14239267 |
aatcgtagcactaacatccgaacaacgcttcaccaatgcctccaaacaccaaatcccccacgccacattcccttcttcctcatccgtcgaattcacccct |
14239366 |
T |
|
| Q |
195 |
aaaggatccttcaacgaagtcaacgtattcaaaattagatcaactgccaaaagccttaaattcactttccctaaactcatcttcacagcatacttcacaa |
294 |
Q |
| |
|
||||||||||||||| | |||| ||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
14239367 |
aaaggatccttcaacaacgtcacaagattcaaaataagatcaaccgccaaaagccttaaattggttttcccttgactcatcttcacaacatacttcacaa |
14239466 |
T |
|
| Q |
295 |
actcaatctaatcccccaaatccataaccctaacaacctccataataaaatcaacagccaatgctttatacctcggctcagctttatccggcgccttatt |
394 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||| |||||||| || ||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
14239467 |
actcaatctgatcccccactgccataaccctaacaacctccattataaaatccaccgccaacgc------cctcggatcagctttatccggcgccttatt |
14239560 |
T |
|
| Q |
395 |
cgccaaatacctcggaaaattagccaacgctttcttcacaccattcgaa |
443 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
14239561 |
cgccaaatatctcggaaaattaaccaacgctttcctcacaccatccgaa |
14239609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University