View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13417_high_3 (Length: 368)
Name: NF13417_high_3
Description: NF13417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13417_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 18106379 - 18106507
Alignment:
| Q |
228 |
aaccctattaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttata |
327 |
Q |
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| T |
18106379 |
aaccctattaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttata |
18106478 |
T |
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| Q |
328 |
gaattgttttgttgcttcagaatgatgat |
356 |
Q |
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| T |
18106479 |
gaattgttttgttgcttcagaatgatgat |
18106507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 234 - 352
Target Start/End: Original strand, 18097267 - 18097385
Alignment:
| Q |
234 |
attaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttatagaattg |
333 |
Q |
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| T |
18097267 |
attaataattagttttaagccattcaggcatgttgtgcttagactgtgccacttgatcaatgcatgtgaatttggttgttagaagtcagttatagaattg |
18097366 |
T |
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| Q |
334 |
ttttgttgcttcagaatga |
352 |
Q |
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| T |
18097367 |
ttttgttgcttcagaatga |
18097385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 18138986 - 18138868
Alignment:
| Q |
234 |
attaataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttatagaattg |
333 |
Q |
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| T |
18138986 |
attagtaattagttttaagccattcaggcatgttgtgcttagagtgtgccacttgatcaatgaatgtgagtttggttgttagaagtcagttataaaattg |
18138887 |
T |
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| Q |
334 |
ttttgttgcttcagaatga |
352 |
Q |
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| T |
18138886 |
ttttgttgcttcagaatga |
18138868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 18300576 - 18300470
Alignment:
| Q |
27 |
cttcttgtgctaaagagagaacaattactcgcatcaagtcattacttcatcttttttacggcctttctccgttctaaaccaccaataaagcaggtgctca |
126 |
Q |
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| T |
18300576 |
cttcttgtgataatgagagaacaactactcaaatcaggtcattatttcatattctttactgcctttatccattccaaaccaccaataaatcaagtgcata |
18300477 |
T |
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| Q |
127 |
tggtttt |
133 |
Q |
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| T |
18300476 |
tggtttt |
18300470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 37875943 - 37875985
Alignment:
| Q |
237 |
aataattagttttaagccattcgggcatgttgtgcctagagta |
279 |
Q |
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| T |
37875943 |
aataattagttttaagccattcaggcatgttgcgcttagagta |
37875985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 23895738 - 23895696
Alignment:
| Q |
237 |
aataattagttttaagccattcgggcatgttgtgcctagagta |
279 |
Q |
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| T |
23895738 |
aataattagttttaagccattcaggcatgttgcgcttagagta |
23895696 |
T |
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