View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13417_low_2 (Length: 485)
Name: NF13417_low_2
Description: NF13417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13417_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 3908918 - 3908453
Alignment:
| Q |
1 |
aactccaacaccaagattctgagactgttcaaaagtgtgtgatgcagagtgtgctgatggatttgaatttaaagaatgattaaatgccgcaaaaggcgac |
100 |
Q |
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| T |
3908918 |
aactccaacaccaagattctgagactgttcaaaagtgtgtgatgcagagtgtgctgatggatttgaatttaaagaatgattaaatgcagcaaaaggcgac |
3908819 |
T |
|
| Q |
101 |
atgtaaccaacaacacctccttgataaaaagaagcagcagaggaaaatgaagcaaaaacagaagaagagtttttagccatagcagccatggtcaactgat |
200 |
Q |
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| T |
3908818 |
atgtaaccaacaacacctccttgataaaaagaagcagcagaggaaaatgaagcaaaaacagaagaagagtttttagccatagcagccatggtcaactgat |
3908719 |
T |
|
| Q |
201 |
cggttgattgtggcagtgttggctgagacagagaagaattacttgatggtgttgaggatgatggagttttggctttctttcccttacgacaaccaccacc |
300 |
Q |
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| T |
3908718 |
cggttgattgtggcagtgttggctgagacagagaagaattacttgatggtgttgaggatgatggagttttggatttctttcccttacgacaaccaccacc |
3908619 |
T |
|
| Q |
301 |
aataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgttgtaatagcag |
400 |
Q |
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| T |
3908618 |
aataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagataggctatagttgttgtaatagcag |
3908519 |
T |
|
| Q |
401 |
aacttggtgttgaatgaatcacaccttggacacttctgaggttgaggatgagcttgaacaagctta |
466 |
Q |
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| T |
3908518 |
aacttggtgttgaatgaatcacacctaggacacttctgaggttgaggatgagcttgaacaagctta |
3908453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 293 - 412
Target Start/End: Complemental strand, 39741183 - 39741064
Alignment:
| Q |
293 |
ccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgttgt |
392 |
Q |
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| T |
39741183 |
ccacctccaacaggaacattccttaatgttccacctttggtccaataccttctgcaagatttgcagaaatatcttggctgagtaagactgtagttgttgt |
39741084 |
T |
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| Q |
393 |
aatagcagaacttggtgttg |
412 |
Q |
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| T |
39741083 |
aataacagaatttggtgttg |
39741064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 34646118 - 34646049
Alignment:
| Q |
291 |
aaccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaa |
360 |
Q |
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| T |
34646118 |
aaccaccaccaacaggaatgtttctaatggatccaccttgagtccaataccttctacatgttttgcagaa |
34646049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 13481069 - 13481012
Alignment:
| Q |
379 |
gctatagttgttgtaatagcagaacttggtgttgaatgaatcacaccttggacacttc |
436 |
Q |
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| T |
13481069 |
gctatagttgttgtagtagcagaattttgtgttgggtgagtcacatcttggacacttc |
13481012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 432
Target Start/End: Original strand, 34976165 - 34976278
Alignment:
| Q |
319 |
tgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgttgtaatagcagaacttggtgttgaatgaa |
418 |
Q |
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| T |
34976165 |
tgttcctcctttggtccaataccttctacaagtcttgcagaagtaccttggctgagagagactgtaattgttgtagtagcagaatttggtgtgagttgaa |
34976264 |
T |
|
| Q |
419 |
tcacaccttggaca |
432 |
Q |
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| T |
34976265 |
tcacaccttggaca |
34976278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 432
Target Start/End: Complemental strand, 41895928 - 41895787
Alignment:
| Q |
291 |
aaccaccaccaataggaacatttctcaatgttccaccttgagtccagtaccttctgcatgttttgcagaagaaacgaggctgagaaaggctatagttgtt |
390 |
Q |
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| T |
41895928 |
aaccaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagtaccttggttgtgagaggctatagttatt |
41895829 |
T |
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| Q |
391 |
gtaatagcagaacttggtgttgaatgaatcacaccttggaca |
432 |
Q |
| |
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| T |
41895828 |
gtagtaacagaattttgtgttagttgaattgcaccttggaca |
41895787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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