View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13417_low_6 (Length: 232)
Name: NF13417_low_6
Description: NF13417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13417_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 34721565 - 34721416
Alignment:
| Q |
67 |
tggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaatgtcggggaa |
166 |
Q |
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| T |
34721565 |
tggcaagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaacgaagggagtttcctcctaaatgtcggggaa |
34721466 |
T |
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| Q |
167 |
gtttgggaacaagacaatggccaagtttctttacaacaacagcttgttta |
216 |
Q |
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| T |
34721465 |
gtttgggaacaagacaatggccaagtttctttacaacaacagcttgttta |
34721416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 206
Target Start/End: Complemental strand, 34727895 - 34727740
Alignment:
| Q |
51 |
tactgcttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcct |
150 |
Q |
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| T |
34727895 |
tactgcttggaatatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgaggcgaagagtttcct |
34727796 |
T |
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| Q |
151 |
cctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
206 |
Q |
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| T |
34727795 |
cctaaatgtcagggaagtttgggaacaagataatggtgtagtttctctacaacaac |
34727740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 18928831 - 18928986
Alignment:
| Q |
51 |
tactgcttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcct |
150 |
Q |
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| T |
18928831 |
tactgcttggaatatggggtatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgatgcaaagagtttcct |
18928930 |
T |
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| Q |
151 |
cctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
206 |
Q |
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| T |
18928931 |
cctaaatgtcagggaagattgggaacacgataatgggcaggtttctctacaacaac |
18928986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 34730959 - 34730898
Alignment:
| Q |
145 |
tttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
206 |
Q |
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| T |
34730959 |
tttcctcctaaatgtcagggaagtttgggaacaagataatggcatagtttctctacaacaac |
34730898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 18924027 - 18924094
Alignment:
| Q |
153 |
taaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaacagcttgtttatgat |
220 |
Q |
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| T |
18924027 |
taaatgtccggcaagtttgggaacaagataatggcgaagtttctttacaacaacaacttctttctgat |
18924094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 207
Target Start/End: Complemental strand, 34716029 - 34715865
Alignment:
| Q |
46 |
tcctctactgcttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtc---actcttttaactaaggg |
142 |
Q |
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| T |
34716029 |
tcctgtactgcttgggatatggggcggaggagggatcggtaaaacaacaattgccaaagcagtttataatgaaatccatcgccaccattttgaggcaagg |
34715930 |
T |
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| Q |
143 |
aatttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaaca |
207 |
Q |
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| T |
34715929 |
agcttcctcttaaatgtcggtgaagtttggaaacaagataatggcgaagtttctttacaaaaaca |
34715865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 34717781 - 34717711
Alignment:
| Q |
48 |
ctctactgcttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaa |
118 |
Q |
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| T |
34717781 |
ctctactgattgggatatgaggcatgggagggattgacaaaacaaccattgctaaatccggttataataaa |
34717711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 34735558 - 34735496
Alignment:
| Q |
145 |
tttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaaca |
207 |
Q |
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| T |
34735558 |
tttcctcccaaatgtcagggaagtctgggaacaagataatggcgtagtttctctacaacaaca |
34735496 |
T |
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