View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13418_high_2 (Length: 539)
Name: NF13418_high_2
Description: NF13418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13418_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 151 - 527
Target Start/End: Complemental strand, 14347666 - 14347286
Alignment:
| Q |
151 |
tcctccaactttttcttttgttgagtccaaagaagagactcagtcttgtacttggcag-------ccaaatctttcttctcttgtttcaacttggaatat |
243 |
Q |
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| T |
14347666 |
tcctccaactttttcttttgttgagtccaaagaagagactcagtcttgtacttggcagttggcagccaaatctttcttctcttttttcaaattggaataa |
14347567 |
T |
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| Q |
244 |
gcagcggccaacttctctttttcggcagctaactctttctctaagttatcgactttgttccttaaagtctcaatgctaacatccttttgaataattgcat |
343 |
Q |
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| T |
14347566 |
acagtggctaacttgtttttttc---agccaattctttctctaagttagcaattttgttctttaaagtgtcaatgctaacatccttttgaataattgcat |
14347470 |
T |
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| Q |
344 |
gcccaagatgatgaaccatggcaatagacctcagattgtgagaagttagtgctttgcaaacaccaatatccccagctctagcaaattttgcttcgtcagt |
443 |
Q |
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| T |
14347469 |
gcccaagatgatgaaccatggcaatagacctcagattgtgagaagttagtgctttgcaaacaccaatatccccagctctagcaaattttgcttcgtcagt |
14347370 |
T |
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| Q |
444 |
tggacgcattatatgctcatctacgatgttagatcgatcgatggacaaattccataatgagtcctcacctttgtcaaactccct |
527 |
Q |
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| T |
14347369 |
tggacgcattatatgctcatctatgatgttagatcgatcgatggacaaattccacaatgagtcctcacctttgtcaaactccct |
14347286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 14348068 - 14347943
Alignment:
| Q |
1 |
acccatttgacactttatgtatcatataggaaaagaaataatcatattgaacaagaaaaaagaagaaaggaaaatacttgttgagcaggtaaagttagca |
100 |
Q |
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| T |
14348068 |
acccatttgacactt-atgtatcatataggaaaagaaagaatcatattgaacaagaaaaaagaagaaagcaaaatacttgttgagaaggtaaagttagca |
14347970 |
T |
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| Q |
101 |
ttcataatctttcagcaagaaattaac |
127 |
Q |
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| T |
14347969 |
ttcataatcattcagcaagaaattaac |
14347943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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