View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13418_low_5 (Length: 351)
Name: NF13418_low_5
Description: NF13418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13418_low_5 |
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| [»] scaffold0119 (3 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 22331 - 22633
Alignment:
| Q |
18 |
atattggtgaataaaaatttacaaacctgatattcaatcaacggcctgacacattttggtttgcaagagtcttcaaaaaatctcttctgatcaacaggtt |
117 |
Q |
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||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22331 |
atattagtgaataaaaatttacaaaccttatattcaattaacggcctgacacattttggtttgcaagagtcttcaaaaaatctcttctgatcaacaggtt |
22430 |
T |
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| Q |
118 |
cctcatcagccctgaattcattcacaataaaatcaaaacattagttaatctcaatccttgatttgagatcggacagtccaaatcaaaatccaagatttaa |
217 |
Q |
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| T |
22431 |
cctcatcagccctgaattcattcacaataaaatcaaaacattagttaatctcaatccttgatttgagatcggacagtccaaatcaaaatccaagatttaa |
22530 |
T |
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| Q |
218 |
aattgggggatataagatgtgtttgtattggaatggagagatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaag |
317 |
Q |
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| T |
22531 |
aat-------tataagatgtgtttgtattggaatggagagatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaag |
22623 |
T |
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| Q |
318 |
agaggttgca |
327 |
Q |
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|||||||||| |
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| T |
22624 |
agaggttgca |
22633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 33430 - 33566
Alignment:
| Q |
18 |
atattggtgaataaaaatttacaaacctgatattcaatcaacggcctgacacattttggtttgcaagagtcttcaaaaaatctcttctgatcaacaggtt |
117 |
Q |
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| T |
33430 |
atattagtgaataaaaatttagaaacctgatattcaatcaacggcctgacacattttggtttgcaagagtcttcaaaaaatctcttctgatcaacaggtt |
33529 |
T |
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| Q |
118 |
cctcatcagccctgaattcattcacaataaaatcaaaacat |
158 |
Q |
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| T |
33530 |
cctcgtcagccctgaattc----acaataaaatccaaacat |
33566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 27038 - 27150
Alignment:
| Q |
42 |
acctgatattcaatcaacggcctgacacattttggtttgcaagagtcttcaaaaaatctcttctgatcaacaggttcctcatcagccctgaattcattca |
141 |
Q |
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||||||||||||| ||||| || |||||||||||||||||||| ||||||| || |||| |||||||||||||||| |||||||||||||| | |
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| T |
27038 |
acctgatattcaagtaacggtctcacacattttggtttgcaagactcttcaagaagcttctttggatcaacaggttcctcgtcagccctgaattc----a |
27133 |
T |
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| Q |
142 |
caataaaatcaaaacat |
158 |
Q |
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| T |
27134 |
caataaaatccaaacat |
27150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 1278760 - 1278458
Alignment:
| Q |
18 |
atattggtgaataaaaatttacaaacctgatattcaatcaacggcctgacacattttggtttgcaagagtcttcaaaaaatctcttctgatcaacaggtt |
117 |
Q |
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||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1278760 |
atattagtgaataaaaatttacaaaccttatattcaattaacggcctgacacattttggtttgcaagagtcttcaaaaaatctcttctgatcaacaggtt |
1278661 |
T |
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| Q |
118 |
cctcatcagccctgaattcattcacaataaaatcaaaacattagttaatctcaatccttgatttgagatcggacagtccaaatcaaaatccaagatttaa |
217 |
Q |
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| T |
1278660 |
cctcatcagccctgaattcattcacaataaaatcaaaacattagttaatctcaatccttgatttgagatcggacagtccaaatcaaaatccaagatttaa |
1278561 |
T |
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| Q |
218 |
aattgggggatataagatgtgtttgtattggaatggagagatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaag |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1278560 |
aat-------tataagatgtgtttgtattggaatggagagatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaag |
1278468 |
T |
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| Q |
318 |
agaggttgca |
327 |
Q |
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|||||||||| |
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| T |
1278467 |
agaggttgca |
1278458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 1274053 - 1273958
Alignment:
| Q |
42 |
acctgatattcaatcaacggcctgacacattttggtttgcaagagtcttcaaaaaatctcttctgatcaacaggttcctcatcagccctgaattca |
137 |
Q |
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||||||||||||| ||||| || |||||||||||||||||||| ||||||| || |||| |||||||||||||||| ||||||||||||||| |
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| T |
1274053 |
acctgatattcaagtaacggtctcacacattttggtttgcaagactcttcaagaagcttctttggatcaacaggttcctcgtcagccctgaattca |
1273958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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