View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13419_high_1 (Length: 631)
Name: NF13419_high_1
Description: NF13419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13419_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Complemental strand, 19292338 - 19291731
Alignment:
| Q |
1 |
agcttcactaaactctctcttgtctcatgttactaaaattgaaacttattgctcattttagtccctctttagattgaaaattgccctaattattgtttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19292338 |
agcttcactaaactctctcttgtctcatgttactaaaattgaaacttattgctcattttagtccctctttagattgaaaattgccctaattattgtttaa |
19292239 |
T |
|
| Q |
101 |
tattatatattcaggaaatcgatcgcaaagcaagagaagattaaatagaaaggcaacctgcatgtcatgtagttactgcctaaagatttggcaacataga |
200 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19292238 |
tgttatatattcaggaaatcg----caaagcaagagaagattaaatagaaaggcaacctgcatgtcatgtagttactgcctagagatttggcaacataga |
19292143 |
T |
|
| Q |
201 |
atttgcatttaggacatctcctccgtttattattcttagcagccgggcgcgtcaacataccatcttctttctccctcttgtccgcgttcagcttctcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
19292142 |
atttgcatttaggacatctcctcagtttatt-ttcttagcagccgggcgcgtcaacataccatcttctttctccctcctgtcggtgttcagcttctcaaa |
19292044 |
T |
|
| Q |
301 |
cccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattcttaacagcgtcggttcca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
19292043 |
cccgctgcattcaatcccttcatgccatggaactttacattgtgcacataacatcctattacaattaggacatattgaattcttaacaacctcggttcca |
19291944 |
T |
|
| Q |
401 |
tggttgatcaagagagcgggacattctggaaatggacaatagaatttatcagaaatattgatcaaagccttgcacattcccttaccccaccgatcaaaaa |
500 |
Q |
| |
|
| |||||||| |||||| ||||||||||| |||||||||||| ||| |||| || |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19291943 |
tcattgatcaaaagagcgaaacattctggaagaggacaatagaatctatacgaaacatctatcaaagccttgcacaatcccttaccccaccgatcaaaaa |
19291844 |
T |
|
| Q |
501 |
cctcgtccgnnnnnnnttaaactgcaaaacttaacttttaacgagcctctgcccttggaaataggacacctaatattgaccatgttatcttcaagcttgg |
600 |
Q |
| |
|
||||||| | || ||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19291843 |
cctcgtctgaaaaaaattgaactgcaaaactttgcttttaacgagcctctgcacttggaaataggacaccgaatattgaccatgttatcttcaagcttgg |
19291744 |
T |
|
| Q |
601 |
aaccgatgtattt |
613 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19291743 |
aaccgatgtattt |
19291731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 184 - 505
Target Start/End: Complemental strand, 19270825 - 19270507
Alignment:
| Q |
184 |
agatttggcaacatagaatttgcatttaggacatctcctccgtttattattcttagcagccgggcgcgtcaacataccatcttctttctccctcttgtcc |
283 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||| ||||| || |||| ||||||| ||||| |||||||| |||||||||||| ||||| |||| |
|
|
| T |
19270825 |
agatttggcaacataaattctgcatttaggacatcgcctccacttcttatccttagcaa---ggcgcatcaacataacatcttctttcttcctctcgtcc |
19270729 |
T |
|
| Q |
284 |
gcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattct |
383 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||| ||| || | |
|
|
| T |
19270728 |
gcgttcagcttctcaaactcgctgcattcgattccttcatgccatggaaccttacattttgcacaaaacatcctattacaattaggacattctgagtttt |
19270629 |
T |
|
| Q |
384 |
taacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaatttatcagaaatattgatcaaagccttgcacattccctt |
483 |
Q |
| |
|
|||||| ||| |||| | |||||||| ||||| | ||| |||| ||| ||||| ||||| || || |||| || || || ||||| |||| || | |
|
|
| T |
19270628 |
taacagtatcgattccgtcattgatcaaaagagcagaacagtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttg |
19270529 |
T |
|
| Q |
484 |
accccaccgatcaaaaacctcg |
505 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
19270528 |
accccagcgatcaaaaacctcg |
19270507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 253 - 447
Target Start/End: Complemental strand, 19255051 - 19254857
Alignment:
| Q |
253 |
caacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataac |
352 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
19255051 |
caacataacatcctctttctccctctcgtccgcattcagcgtctcgaactcactgcattcaatcccttcatgccatggaactttacattgtgcacagaac |
19254952 |
T |
|
| Q |
353 |
atcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaattt |
447 |
Q |
| |
|
||||| | ||||| ||||||| || ||| ||||||| || ||| ||| |||||||| ||||| | ||| |||| ||| ||||| |||||||| |
|
|
| T |
19254951 |
atcctttcacaataaggacattctgctttcataacagcctccgtttcatcattgatcaacagagctgaacagtctgcaaagggacagtagaattt |
19254857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 317 - 503
Target Start/End: Complemental strand, 19314983 - 19314797
Alignment:
| Q |
317 |
ccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagag |
416 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||| ||||||| || ||||||| | |||||| || | |
|
|
| T |
19314983 |
ccttcatgccatggaactttacattgtgcacaaaacatcctattacaattagggcattctgaatttctaacagcttccgttccatcatcgatcaaaagtg |
19314884 |
T |
|
| Q |
417 |
cgggacattctggaaatggacaatagaatttatcagaaatattgatcaaagccttgcacattcccttaccccaccgatcaaaaacct |
503 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||| |||| || || |||||||| || | ||||||||||||| |||||||||| |
|
|
| T |
19314883 |
ctgaacagtctggaaatggacaatagaatttattcgaaacatcgaacaaagcctcacaaagcgccttaccccaccgttcaaaaacct |
19314797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 19260483 - 19260433
Alignment:
| Q |
339 |
attgtgcacataacatcctattacaattaggacatattgaattcttaacag |
389 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
19260483 |
attgtgcataaaacatcctattacaattaggacattctgaatttttaacag |
19260433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 611
Target Start/End: Complemental strand, 19270450 - 19270402
Alignment:
| Q |
563 |
aggacacctaatattgaccatgttatcttcaagcttggaaccgatgtat |
611 |
Q |
| |
|
|||||||| |||||| || |||||||||||||| |||||||| |||||| |
|
|
| T |
19270450 |
aggacaccgaatattaacgatgttatcttcaagtttggaacctatgtat |
19270402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 13206731 - 13206809
Alignment:
| Q |
254 |
aacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaa |
332 |
Q |
| |
|
|||||| ||||||||| | ||||| ||||| |||| ||||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
13206731 |
aacatatcatcttcttcccgcctctcatccgcattcatcttctaaaagtcggtgcattcaatcccttcatgccatggaa |
13206809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University