View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13419_high_2 (Length: 493)
Name: NF13419_high_2
Description: NF13419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13419_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 4643091 - 4642617
Alignment:
| Q |
1 |
tagtcattgcctcctatctctcccacaataaacaaggagctgtgaagaacacctttgcagcctaaagagaatgaaatcgcataaaccagaattaccaact |
100 |
Q |
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| T |
4643091 |
tagtcattgcctcctatctctcccacaataaacaaggagctgtgaagaacacctttgcagcctaaagagaatgaaatcgcataaaccagaattaccaact |
4642992 |
T |
|
| Q |
101 |
taaacagtcaagaaaaagcaagggatacaaagtaataagtaaatactgagatcaattaaatatttcgtgaatcaaatccttacatgaagaacaacattca |
200 |
Q |
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| T |
4642991 |
taaacagtcaagaaaaagcaagggatacaaagtaataagtaaatactgagatcaattaaatatttcgtgaatcaaatccttacatgaagaacaacattca |
4642892 |
T |
|
| Q |
201 |
aatactaggaaagctactgaatatttaaatcaaactatctcccagacaaacttctcagtccatttatattatttaaacatcatatcatataatcaagagt |
300 |
Q |
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| T |
4642891 |
aatactaggaaagctactgaatatttaaatcaaactatctcccagacaaaattctcagtcaatttctattatttaaacatcatatcatataatcaagagt |
4642792 |
T |
|
| Q |
301 |
aaatcttcaatttgatccataaactttcattatctcttctatttgatcccttaactataaaactataatgaatagtctataaactattctcaacccatca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4642791 |
aaatcttcaatttgatccataaactttcattatctcttctatttgatcccttaactataaaactataataaatagtctataaactattctcaacccatca |
4642692 |
T |
|
| Q |
401 |
aattcgtcgttcaaattaataaatgcaaatttgcaatgggacaagtatttataaaaacaaaatgtgggaaagcga |
475 |
Q |
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| T |
4642691 |
aattcgtggttcaaattaataaatgcaaatttgcaatgggacaagtatttataaaaacaaaatgtgggaaagcga |
4642617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 49912760 - 49912805
Alignment:
| Q |
300 |
taaatcttcaatttgatccataaactttcattatctcttctatttg |
345 |
Q |
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|||| ||||||||||||||||||||| ||||||| ||| ||||||| |
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| T |
49912760 |
taaaccttcaatttgatccataaactatcattatgtctcctatttg |
49912805 |
T |
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