View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13419_high_4 (Length: 319)
Name: NF13419_high_4
Description: NF13419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13419_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 34260381 - 34260682
Alignment:
| Q |
1 |
aaagttgaacaaatttaacattgttacttatcaatctcgttaagattagggatggagtggactatcaataaattatgtagtttcattttggccaagagtt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34260381 |
aaagttgaataaatttaacattgttacttatcaatctcgttaagattagggatggagtggactatcaataaattatgtagtttcattttggccaagagtt |
34260480 |
T |
|
| Q |
101 |
gtaataattcatatatatgatttgaaagcaacagaatgaagagaatgcaaaggccatctccctatttgagaatgttgttcgtcttaatgatgccattgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34260481 |
gtaataattcatatatatgatttgaaagcaacagaatgaagagaatgcaaaggccatctccctatttgagaatgttgttcgtcttaatgatgccattgaa |
34260580 |
T |
|
| Q |
201 |
gatgaaggcaagcgacttgagaatttagttagaggaatttttgcagggaatgtatttgatcttggttctccccaggtagtttgattttttccatgtaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34260581 |
gatgaaggcaagcgacttgagaatttagttagaggaatttttgcagggaatgtatttgatcttggttctccccaggtagtatgattttttccatgtaatt |
34260680 |
T |
|
| Q |
301 |
tt |
302 |
Q |
| |
|
|| |
|
|
| T |
34260681 |
tt |
34260682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 34250445 - 34250744
Alignment:
| Q |
1 |
aaagttgaacaaatttaacattgttacttatcaatctcgttaagattagggatggagtggactatcaataaattatgtagtttcattttggccaagagtt |
100 |
Q |
| |
|
|||||||||||||||| | | |||||||| ||||| || ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| || |
|
|
| T |
34250445 |
aaagttgaacaaattttatactgttacttttcaatgtcattaagataggggatggagtggactatcaataaatcatgcagtttcattttggccaagattt |
34250544 |
T |
|
| Q |
101 |
gtaataattcatatatatgatttgaaagcaacagaatgaagagaatgcaaaggccatctccctatttgagaatgttgttcgtcttaatgatgccattgaa |
200 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
34250545 |
ataataattcatat--atgatttgaatgcaacaggctgaagagaacgcaaaggccatctccctatttgaaaatgttgttcgtcttaatgatgctattgaa |
34250642 |
T |
|
| Q |
201 |
gatgaaggcaagcgacttgagaatttagttagaggaatttttgcagggaatgtatttgatcttggttctccccaggtagtttgattttttccatgtaatt |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
34250643 |
gatgaaggcaatcgacttgagaatttagttagaggaatttttgcagggaacgtatttgatcttggttctccccaggtagtttgattttctatatgtaatt |
34250742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 136 - 279
Target Start/End: Complemental strand, 20867865 - 20867722
Alignment:
| Q |
136 |
atgaagagaatgcaaaggccatctccctatttgagaatgttgttcgtcttaatgatgccattgaagatgaaggcaagcgacttgagaatttagttagagg |
235 |
Q |
| |
|
||||||| |||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||| || |
|
|
| T |
20867865 |
atgaagaaaatgcaaaagccatttccctgtttgagaatgttgttcgtgttaatgatgccattgaagatgaagtcaagcgagttgagaatctagttaaggg |
20867766 |
T |
|
| Q |
236 |
aatttttgcagggaatgtatttgatcttggttctccccaggtag |
279 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| | ||||||| |
|
|
| T |
20867765 |
aatttttgcaggaaacatatttgatcttggttctgcgcaggtag |
20867722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University