View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13419_low_1 (Length: 772)
Name: NF13419_low_1
Description: NF13419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13419_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 336 - 761
Target Start/End: Original strand, 2504653 - 2505078
Alignment:
| Q |
336 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2504653 |
ctcataactaattaatattaatattccttacatttcagtcccttaactaatgcttctgtcaaccaacttggtcctagtatagtatttgctatatcaatat |
2504752 |
T |
|
| Q |
436 |
tttctacttcactagggtttaaactgtaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatccgtgctagtc |
535 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2504753 |
tttctacttcactagggtttaaactctaaccttttaacttcttcaacttcttctttaacacttgattcgaaccatttgagttatcctatccttgctagtc |
2504852 |
T |
|
| Q |
536 |
ttctacttttgattcttatatatcgtcttttcatatattgcatacatttgatgaaacattctctgatgcaatattgttcaaactctgcagatcattccaa |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2504853 |
ttctacttttgattcttatatatcgtcttttcatatattgcatacatttgatgaaccattctctgatgcaatattgttcaaactctgcagatcattccaa |
2504952 |
T |
|
| Q |
636 |
tggaaccatgcggtgtagggtactggattatctcatcagttcaagtaccactagctgtggttttcactgcttggatggtattaagaaaagaaagtattca |
735 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2504953 |
tggaaccatgcggtgtaggatactggattatctcatcagttcaagtaccactagctgtggttttcactgcttggatggtattaagaaaagaaagtattca |
2505052 |
T |
|
| Q |
736 |
agaccagactctcataccacaggttc |
761 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2505053 |
agaccagactctcataccacaggttc |
2505078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 2504340 - 2504587
Alignment:
| Q |
18 |
aacaattatggtggaaaagtgggcattagattattgttttactataataatcagatagagacaagccatgctgattagtggttactaatccatcacaaat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2504340 |
aacaattatggtggaaaagtgggcattagatcattggtttactataataatcagatagagacaagccatgctgattagtggttactaatccatcacaaat |
2504439 |
T |
|
| Q |
118 |
aaggaggaagaggtagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgctagatttggaaactgtcttttttaataatgacta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2504440 |
aaggaggaagaggtagtagatccaaaagatcaatagatagtgtagtacagaatccaaaagctttgctagatttggaaactgtcttttttaataatgacta |
2504539 |
T |
|
| Q |
218 |
gtgttgatcatgtactattattgtactgtataaggcactttgatcttgtac |
268 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
2504540 |
gtgttgatcctgtac---tattgtactgcataaggcactttgatcttgtac |
2504587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University