View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341R-Insertion-1 (Length: 1134)
Name: NF1341R-Insertion-1
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341R-Insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 471
Target Start/End: Original strand, 16470479 - 16470941
Alignment:
| Q |
9 |
aaaggctccgtcccggagtaagattttttctaccataggtacgagagttcaaaggccattttcaaagatcaacataaagcaattcaaagacaaatattat |
108 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16470479 |
aaaggctccgtccccgagtaagattttttctaccataggtacgagagttcaaaggccattttcgaagatcaacataaagcaattcaaagacaaatattat |
16470578 |
T |
|
| Q |
109 |
aagagtcattcaaggttaaaagtctctaacttcccaaagctgtcatatcaatagatttaagagaacttcaacacccaagactcgaatagatgaagaaact |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16470579 |
aagagtcattcaaggttaaaagtctctaacttcccaaagctgtcatatcaatagatttaagagaacttcaacacccaagactcgaatagatgaagagact |
16470678 |
T |
|
| Q |
209 |
tgcaagagaaatttttaagatggttaaaggtcacctgagatccacgcattttagaagtttgtttatttcttttcattgaatagtagaaccaaacttcatg |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
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|
| T |
16470679 |
tgcaagagaaattttcaagatggttaaaggacacttgagatccacgcattttagaagtttgtttatttctttttattgaatagtagaatcaaacatcatg |
16470778 |
T |
|
| Q |
309 |
caaattaatttattttcgttctgtaaaataaacctactagataaacacatccgtccttacaagataacatgtgttactggctgcttgaattgaacaatat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16470779 |
caaattaatttattttcgttctgtaaaataaacctactagataaacacatccgtccttacaagataacatatgttactggctgcttgaattgaacaatat |
16470878 |
T |
|
| Q |
409 |
atatannnnnnnnnacaagaaattggacaatatatgtaactctacactgtttcatataatacc |
471 |
Q |
| |
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| | ||||||||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
16470879 |
tttttttttttttgacaagaaattgaacaatatatgtaactctacactgttttatataatacc |
16470941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 540 - 968
Target Start/End: Original strand, 16471010 - 16471439
Alignment:
| Q |
540 |
ccactaatagtcacaattgacaattgattcctcagaaaactagtacattaattagcttaaaatagaaacaacnnnnnnnnnnnnnnnnnnnnnnnggtta |
639 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
16471010 |
ccaccaatagtcacaattgacaattgattcctcagaaaactagtacattaattagcttaaaatagaaacaacttttttttctttttcttctttttggtta |
16471109 |
T |
|
| Q |
640 |
gcttaaaattcttattgtctgatgagttctctaaatgtgaaagcatatctggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtgat |
739 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16471110 |
gcttaaaattcttattgtctgatgagttctctaaatgtgaaagcatatcaggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtgat |
16471209 |
T |
|
| Q |
740 |
acgtttaacagttgccttatagttgtttaaatctactagtctagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatactcaccaatc |
839 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
16471210 |
acgtttaacagttgctttatagttgttcaaatctataagtttagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatacttaccaatc |
16471309 |
T |
|
| Q |
840 |
tgttgatctaggtcaccaacatatactccattgatcttg-ttagtacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatca |
938 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16471310 |
tgttgatctaggtctccaacatatactccattgatcttgtttaatacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatca |
16471409 |
T |
|
| Q |
939 |
agcaaaatacaacacatgtaaagatctcaa |
968 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
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|
| T |
16471410 |
agcataatacaacacatgtaaagatctcaa |
16471439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 645 - 968
Target Start/End: Original strand, 16464093 - 16464417
Alignment:
| Q |
645 |
aaattcttattgtctgatgagttctctaaatgtgaaagcatatctggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtgatacgtt |
744 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16464093 |
aaattattattgtttgatgagttctctaaatgtgaaagcatatctggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtgatacgtt |
16464192 |
T |
|
| Q |
745 |
taacagttgccttatagttgtttaaatctactagtctagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatactcaccaatctgttg |
844 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16464193 |
taacagttgcattatagttgttcaaatctacaagtctagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatacttaccaatctgttg |
16464292 |
T |
|
| Q |
845 |
atctaggtcaccaacatatactccattgatcttg-ttagtacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatcaagcaa |
943 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
16464293 |
atctaggtctccaacatatactccattgatcttgtttagtacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatcaagaaa |
16464392 |
T |
|
| Q |
944 |
aatacaacacatgtaaagatctcaa |
968 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
16464393 |
aatacagcacatgtaaagatctcaa |
16464417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 662 - 936
Target Start/End: Original strand, 16493604 - 16493879
Alignment:
| Q |
662 |
tgagttctctaaatgtgaaagcatatctggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtgatacgtttaacagttgccttatag |
761 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |||| |
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|
| T |
16493604 |
tgagttctctaaatctgaaagcatatcagatgacaatcgaagcagacgaagacttctctccattttaagttctgtgatgcgtgcaacagttgcgttatgc |
16493703 |
T |
|
| Q |
762 |
ttgtttaaatctac-tagtctagttgtgctttcatggaactgaaattggagcttcgcaagttcctcatactcaccaatctgttgatctaggtcaccaaca |
860 |
Q |
| |
|
||||| ||||| || || || ||||||| || ||| ||| |||| ||||| |||||||||||||||| | |||| || |||||||||||||||||| |
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|
| T |
16493704 |
ttgttcaaatcaacggtgttcag-tgtgcttacaaagaattgatattgtagctttgcaagttcctcatacttagcaatttggtgatctaggtcaccaaca |
16493802 |
T |
|
| Q |
861 |
tatactccattgatcttg-ttagtacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacat |
936 |
Q |
| |
|
||||||| |||||||||| |||| || |||| ||| ||||||||||| ||| ||| |||||| |||| | ||||||| |
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|
| T |
16493803 |
tatactcgattgatcttgtttagaacgtccatagcgatttcctcaactaattccagttctgtcctgttctcaaacat |
16493879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 698 - 867
Target Start/End: Original strand, 16499019 - 16499188
Alignment:
| Q |
698 |
gcgaagcaaacgaagacttctctccattttaagttctgtgatacgtttaacagttgccttatagttgtttaaatctac-tagtctagttgtgctttcatg |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||| || || || |||||| || |
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|
| T |
16499019 |
gcgaagcaaacgaagacttctctccattttaagttctgtgatacgtgcaacagttgcgttatgtttgttcaaatcaacggtgttcag-tgtgctcacaaa |
16499117 |
T |
|
| Q |
797 |
gaactgaaattggagcttcgcaagttcctcatactcaccaatctgttgatctaggtcaccaacatatactc |
867 |
Q |
| |
|
||| ||| |||| |||||||||||||||||||||| |||| | |||||||| |||||||||||| |||| |
|
|
| T |
16499118 |
gaattgatattgtagcttcgcaagttcctcatactttgcaattttttgatctaagtcaccaacataaactc |
16499188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 566 - 611
Target Start/End: Original strand, 16464011 - 16464056
Alignment:
| Q |
566 |
attcctcagaaaactagtacattaattagcttaaaatagaaacaac |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16464011 |
attcctcagaaaactagtacattaattagcttaaaatagaaacaac |
16464056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 16463683 - 16463745
Alignment:
| Q |
348 |
gataaacacatccgtccttacaagataacatgtgttactggctgcttgaattgaacaatatat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||| |
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|
| T |
16463683 |
gataaacacatccgtccttacaagataacataggttactggctgttcgaattgaacagtatat |
16463745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 2e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 821 - 968
Target Start/End: Original strand, 44950209 - 44950357
Alignment:
| Q |
821 |
ttcctcatactcaccaatctgttgatctaggtcaccaacatatactccattgatcttgtt-agtacatccacagcaatttcctcaaccaatgccaattct |
919 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| || ||||||| ||||||||||||||| |||||||||||| |
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|
| T |
44950209 |
ttcctaatacttaccaatctgttgatctaggtcaccaacatatacttgattgatcttgtttagcacatccatagcaatttcctcaactaatgccaattct |
44950308 |
T |
|
| Q |
920 |
gttctgtacacaaacatcaagcaaaatacaacacatgtaaagatctcaa |
968 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
44950309 |
gttctgtacacaaacattaagaaaaatacagcacatgtaaagatctcaa |
44950357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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