View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341R-Insertion-10 (Length: 470)
Name: NF1341R-Insertion-10
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341R-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 35235174 - 35235586
Alignment:
| Q |
12 |
acggcccagacgaagacgaagatgaaatcgccgccgcatatgaagagctatacggtgttgcgtacagtggtgttagtgtgcttggaaatgatataaatgt |
111 |
Q |
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| T |
35235174 |
acggcccagacgaagacgaagatgaaatcgccgccgcatatgaagagctatacggtgttgcgtacagtggtgttagtgtgcttggaaatgatataaatgt |
35235273 |
T |
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| Q |
112 |
gatggataagaaggcgaggaaagatacatcattcggttcgggtgtaaagaaggaaaagataagagatgggttggaagaaagagttgttcaagttaggagg |
211 |
Q |
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| T |
35235274 |
gatggataagaaggcgaggaaagataccggattcggttcgggtgtaaagaaggaaaagataagagatgggttggaagaaagagttattcaagttaggagg |
35235373 |
T |
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| Q |
212 |
gttactaaggttgttaaaggagggaaacaaatgaggtttagggctattgttgttgttggtgataagcaaggacgagttggtgttggtgttgggaaagcta |
311 |
Q |
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| T |
35235374 |
gttactaaggttgttaaaggagggaaacaaatgaggtttagggctattgttgttgttggtgataagcaaggaagagttggtgttggtgttgggaaagcta |
35235473 |
T |
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| Q |
312 |
aggaagttgtttctgctgttcagaaatctgctattaatgctaggaggaatcttattagagttcctatgactaagtacttgacttttcctcataggtaact |
411 |
Q |
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| T |
35235474 |
aggaagttgtttctgctgttcagaaatctgctattaatgctaggaggaatcttattagagttcctatgactaagtacttgacttttcctcataggtaact |
35235573 |
T |
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| Q |
412 |
ttctctaactttc |
424 |
Q |
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| T |
35235574 |
ttctctaactttc |
35235586 |
T |
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