View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1341R-Insertion-11 (Length: 437)
Name: NF1341R-Insertion-11
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341R-Insertion-11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 357
Target Start/End: Original strand, 28154547 - 28154879
Alignment:
| Q |
24 |
gtaggacccttgttttgtgctttgtctataactctatggtcagctcaaaacagctacaaaaaacatgtcctattcataccacatctattttgttttcaaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28154547 |
gtaggacccttgttttgtgctttgtctataactctatggtcagcccaagacagctacaaaaaacatgtcctcttcataccacatctattttgttttcaaa |
28154646 |
T |
|
| Q |
124 |
gtttctaatctaaatatgttaattaatttcagaccaaacaaaatcaacaatgtctgcagataccctactacataataattgatgnnnnnnnngagttgct |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
28154647 |
gtttctaatctaaatatgttaattaatttcagaccaaacaaaatcaacaatatctgcagataccctactacataataattgatg-aaaaaaagtgttgct |
28154745 |
T |
|
| Q |
224 |
catttttactaaatgaaaaaatggcaaaagaaattcaaatgacagctagcaagagtcaatggtgactgatacacgagctcaactacatggttaattaatt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28154746 |
catttttactaaatgaaaaaatggcaaaagaaattcaaatgacagctagcaagagtcaatggtgactgatacacgagctcaactacatggttaattaatt |
28154845 |
T |
|
| Q |
324 |
gaaacacgtggcaggtgttgttcttgtagcagta |
357 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
28154846 |
gaaacacgtggcaggtgttgttcttgtagtagta |
28154879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 28154888 - 28154944
Alignment:
| Q |
381 |
cctcaccacaactttaannnnnnngtgaaatgccatttatatcactcttctcttttg |
437 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28154888 |
cctcaccacaactttaatttttttgtgaaatgccatttatatcactcttctcttttg |
28154944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University