View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1341R-Insertion-12 (Length: 425)

Name: NF1341R-Insertion-12
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1341R-Insertion-12
NF1341R-Insertion-12
[»] chr6 (5 HSPs)
chr6 (262-421)||(2038054-2038204)
chr6 (125-258)||(7124337-7124471)
chr6 (136-261)||(945054-945180)
chr6 (197-261)||(12477911-12477975)
chr6 (156-252)||(4181221-4181317)
[»] chr1 (6 HSPs)
chr1 (134-261)||(49410477-49410605)
chr1 (125-258)||(47036211-47036345)
chr1 (189-260)||(22105393-22105464)
chr1 (168-258)||(45319610-45319700)
chr1 (199-264)||(52382615-52382680)
chr1 (186-258)||(45346267-45346339)
[»] chr2 (9 HSPs)
chr2 (16-119)||(16497521-16497624)
chr2 (168-261)||(30778292-30778385)
chr2 (137-258)||(33751509-33751631)
chr2 (137-263)||(7091068-7091195)
chr2 (156-263)||(37080704-37080811)
chr2 (186-262)||(17692623-17692699)
chr2 (186-258)||(16431880-16431952)
chr2 (186-258)||(37259674-37259746)
chr2 (186-258)||(14805577-14805649)
[»] chr5 (9 HSPs)
chr5 (134-261)||(6767925-6768053)
chr5 (125-258)||(31480463-31480597)
chr5 (125-258)||(40321440-40321574)
chr5 (125-258)||(41405995-41406129)
chr5 (125-258)||(1835960-1836094)
chr5 (156-258)||(39885814-39885916)
chr5 (186-264)||(24782706-24782784)
chr5 (196-261)||(20174061-20174126)
chr5 (214-262)||(32720174-32720222)
[»] chr8 (6 HSPs)
chr8 (125-261)||(30089130-30089270)
chr8 (125-258)||(13800643-13800777)
chr8 (137-271)||(3877559-3877694)
chr8 (156-253)||(1786494-1786591)
chr8 (188-259)||(30936662-30936734)
chr8 (186-258)||(533713-533785)
[»] chr3 (10 HSPs)
chr3 (125-258)||(12945420-12945554)
chr3 (125-258)||(33213418-33213552)
chr3 (135-258)||(29835735-29835859)
chr3 (156-258)||(29702392-29702494)
chr3 (134-262)||(55406336-55406464)
chr3 (163-258)||(20108051-20108146)
chr3 (156-205)||(53284241-53284290)
chr3 (156-258)||(5234704-5234806)
chr3 (186-263)||(39831199-39831276)
chr3 (189-264)||(31654613-31654689)
[»] chr7 (7 HSPs)
chr7 (126-265)||(6444109-6444249)
chr7 (168-258)||(34095842-34095932)
chr7 (156-258)||(47329643-47329745)
chr7 (186-267)||(45974452-45974533)
chr7 (186-258)||(29245281-29245353)
chr7 (188-261)||(29263416-29263490)
chr7 (221-261)||(8419403-8419443)
[»] chr4 (7 HSPs)
chr4 (125-267)||(24226864-24227007)
chr4 (156-263)||(15530058-15530165)
chr4 (133-258)||(45988119-45988245)
chr4 (156-258)||(42063006-42063108)
chr4 (125-258)||(47028103-47028237)
chr4 (194-261)||(28683092-28683158)
chr4 (186-258)||(20135440-20135512)
[»] scaffold0896 (1 HSPs)
scaffold0896 (125-258)||(1893-2027)
[»] scaffold0662 (1 HSPs)
scaffold0662 (125-258)||(6982-7116)
[»] scaffold0166 (1 HSPs)
scaffold0166 (186-264)||(25089-25167)
[»] scaffold0685 (1 HSPs)
scaffold0685 (199-264)||(6628-6693)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 262 - 421
Target Start/End: Complemental strand, 2038204 - 2038054
Alignment:
Q  262 aaattataaaccttcaaaaagcatatgattaaatacttacaataaggccttgcattaagctaagcaacatccaaacattaaaagcacttttctagt-cca 360  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2038204 aaattataaaccttcaaaa-gcatatgattaaatacttacaataaggccttgcattaagctaagcaacatccaaacattaaaagcacttttctagtccca 2038106  T
Q  361 aagttaacaacatttaaacaagcacaaactatacaagaaatgtcacagaagaaatttaatt 421  Q
    ||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  2038105 aagtta---------aaacaagcacaaactatacaagaaatgtcacagaagaaatttaatt 2038054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 7124471 - 7124337
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    |||||||| |||||||| ||| |||||| | |||||||||| | ||||||| ||||||||||||||||| ||||||||||   || |||||||||||||     
T  7124471 ctacgatggaacatatttagcaggtacatactacataccattcaacaatcaacacacatgacatgtggcgcattattattgaatgtaggataacttcact 7124372  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||||||||| ||  | |||||| ||||||||    
T  7124371 gaaaaagtcaattgaatgacttcaccgtagaattt 7124337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 261
Target Start/End: Original strand, 945054 - 945180
Alignment:
Q  136 catattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaa 234  Q
    |||||||||| ||||||||||| ||  ||||| ||||||||||||||||||||||| | ||||||||||   || ||  |||||||| | ||||||||||    
T  945054 catattgagcaggtacacagtaaatttcatgcaacaatcagcacacatgacatgtgacgcattattattgaatgtagagtaacttcatcaaaaaagtcaa 945153  T
Q  235 ttaaagaaattcaccatagaattttcc 261  Q
    || | ||| ||||||||||||||||||    
T  945154 ttgaggaacttcaccatagaattttcc 945180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 12477911 - 12477975
Alignment:
Q  197 tattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 261  Q
    |||||||||||| | | | ||||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  12477911 tattattagttgtatggttacttcaccggaaaagtcaattgaagaacttcaccataaaattttcc 12477975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 4181221 - 4181317
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccata 252  Q
    |||||| |||| ||||| | |||||||||||  || | |||||||||| | || ||||||||||||   |||||||||||| || || |||||||||    
T  4181221 acatactatgcaacaataaacacacatgacacatgacgcattattattggatgtaggataacttcataaaaaaagtcaattgaataacttcaccata 4181317  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 134 - 261
Target Start/End: Original strand, 49410477 - 49410605
Alignment:
Q  134 aacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtc 232  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| | || ||| |||||||||||||||||||    
T  49410477 aacatattgagcaggtacacggtacataccattccacaatcagcacacatgacatgtggcgcattattattggatgtagggtaacttcaccgaaaaagtc 49410576  T
Q  233 aattaaagaaattcaccatagaattttcc 261  Q
    | || ||||| ||||||||||||||||||    
T  49410577 atttgaagaacttcaccatagaattttcc 49410605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 47036211 - 47036345
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    |||||||| |||||||| ||| |||||||| |||||||||||| |||||||| |||||||||||||| | |||||||||| | || | | ||||||||      
T  47036211 ctacgatggaacatattaagcaggtacacaatacataccatgcaacaatcagaacacatgacatgtgacgcattattattggatgtatggtaacttcatt 47036310  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||| ||||||||| ||  | |||||||||||||||    
T  47036311 gaagaagtcaattgaatgacttcaccatagaattt 47036345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 22105464 - 22105393
Alignment:
Q  189 tggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttc 260  Q
    |||| |||||||||| | || ||||||||||||||||||||||||||| ||||| |||| ||||||| ||||    
T  22105464 tggcgcattattattggatgtaggataacttcaccgaaaaagtcaattgaagaacttcatcatagaactttc 22105393  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 45319700 - 45319610
Alignment:
Q  168 acaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||| |||| |||||| ||||| ||||||||||   || | |||||||||||| |||||||||||| ||  | |||||||||||||||    
T  45319700 acaatcaacacaaatgacacgtggcgcattattattgaatgtaagataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 45319610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 52382680 - 52382615
Alignment:
Q  199 ttattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 264  Q
    ||||||| || ||||| ||||||||||| |||||| || || || ||||||||||||||| |||||    
T  52382680 ttattagctgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaa 52382615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 45346339 - 45346267
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||| |||||||||| | || ||||||||||| | ||||||||||||| ||  | |||||| ||||||||    
T  45346339 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccgtagaattt 45346267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 16497521 - 16497624
Alignment:
Q  16 tgttgccttcatttgggttggtttttgtcaatttagttgataatgaaactgatgagggtattgattttgacagtaagaaatataatgattcatcgtgaga 115  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  16497521 tgttgccttcatttgagttggttcttgtcaatttagttgataaggaaactgatgagggtatcgattttgacaataagaaatataatgattcatcatgaga 16497620  T
Q  116 aaga 119  Q
    ||||    
T  16497621 aaga 16497624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 30778385 - 30778292
Alignment:
Q  168 acaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 261  Q
    ||||||||||||||||||||||||||||||||||||   || ||  |||||||| |||||||||||||||||||| |||||| |||||||||||    
T  30778385 acaatcagcacacatgacatgtggcacattattattgaatgtagagtaacttcatcgaaaaagtcaattaaagaacttcaccgtagaattttcc 30778292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 33751631 - 33751509
Alignment:
Q  137 atattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaat 235  Q
    ||||||||| |||||||| |||||| ||| | ||||||| ||||| ||| |||||||||||||||||| | || ||| ||||||||||||||||||||||    
T  33751631 atattgagcaggtacacattacataacattcaacaatcaacacacgtgatatgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaat 33751532  T
Q  236 taaagaaattcaccatagaattt 258  Q
    | ||  | |||||||||||||||    
T  33751531 tgaacgacttcaccatagaattt 33751509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 7091068 - 7091195
Alignment:
Q  137 atattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaat 235  Q
    ||||||||| |||||||| |||||| ||| | ||||||| ||||| ||| | |||||||||||||||| | || ||| ||||||||||||||||||||||    
T  7091068 atattgagcaggtacacattacataacattcaacaatcaacacacgtgatacgtggcacattattattggatgtagggtaacttcaccgaaaaagtcaat 7091167  T
Q  236 taaagaaattcaccatagaattttccaa 263  Q
    | ||  | ||||||||||||||| ||||    
T  7091168 tgaacgacttcaccatagaatttcccaa 7091195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 156 - 263
Target Start/End: Original strand, 37080704 - 37080811
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 255  Q
    |||||| |||| ||||| | |||||||||||  |||| |||||||||| | || |||||||||||| | |||||||||||| || || ||||||||||||    
T  37080704 acatactatgcaacaataaacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccatagaa 37080803  T
Q  256 ttttccaa 263  Q
    ||| ||||    
T  37080804 tttcccaa 37080811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 17692623 - 17692699
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcca 262  Q
    ||||||| |||||||||| | || ||||||||||| | ||||||||||||| ||  | |||||||||||||||||||    
T  17692623 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattttcca 17692699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 16431880 - 16431952
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||| |||||||||| | || ||||||||||| | ||||||||||||| ||  | |||||||||||||||    
T  16431880 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 16431952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 37259746 - 37259674
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||| |||||||||| | || ||||||||||| | ||||||||||||| ||  | |||||||||||||||    
T  37259746 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 37259674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 14805649 - 14805577
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||| |||||||||| | || ||||||||||| | |||||| |||||| ||  | |||||||||||||||    
T  14805649 atgtggcgcattattattggatgtaggataacttctctgaaaaattcaatttaatgacttcaccatagaattt 14805577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 6768053 - 6767925
Alignment:
Q  134 aacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtc 232  Q
    |||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||| | || ||  |||||||||||||||||||    
T  6768053 aacatattgagcaggtacacggtacataccattccacaattagcacacatgacatgtggcgcattattattggatgtagagtaacttcaccgaaaaagtc 6767954  T
Q  233 aattaaagaaattcaccatagaattttcc 261  Q
    |||| | ||| ||||||||||||||||||    
T  6767953 aattgaggaacttcaccatagaattttcc 6767925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 31480597 - 31480463
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    |||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||| | || ||| ||||||||||    
T  31480597 ctacgatggaacatattgagcaggtacacaatacataccatgcaacaatcagcacacatgacatgtgacgcattattattggatgtagggtaacttcacc 31480498  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||||||||| ||  | ||| |||||||||||    
T  31480497 gaaaaagtcaattgaatgacttctccatagaattt 31480463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 40321440 - 40321574
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    ||||| || |||||||||||| ||||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | || |||||||||||| |    
T  40321440 ctacggtggaacatattgagcaggtacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatc 40321539  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||||||||| || || |||||||||||||||    
T  40321540 gaaaaagtcaattgaacaacttcaccatagaattt 40321574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 41406129 - 41405995
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    ||||| || |||||||||||| ||||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | || |||||||||||| |    
T  41406129 ctacggtggaacatattgagcaggtacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatc 41406030  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||||||||| || || |||||||||||||||    
T  41406029 gaaaaagtcaattgaacaacttcaccatagaattt 41405995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 1835960 - 1836094
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    ||||| || |||||||||||| ||||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | || |||||||||||| |    
T  1835960 ctacggtggaacatattgagcaggtacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatc 1836059  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    |||||| |||||| || || |||||||||||||||    
T  1836060 gaaaaaatcaattgaacaacttcaccatagaattt 1836094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 39885814 - 39885916
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 255  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||   |  ||| ||||||||||||||||||||||| || || ||||||||||||    
T  39885814 acatactatgcaacaatcagcacacatgacatgtggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaa 39885913  T
Q  256 ttt 258  Q
    |||    
T  39885914 ttt 39885916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 24782784 - 24782706
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 264  Q
    ||||||| |||||||||| | || ||||||||||| | ||||||||||||| ||  | ||||||||||||||| |||||    
T  24782784 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaa 24782706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 20174061 - 20174126
Alignment:
Q  196 ttattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 261  Q
    |||||||||| || ||| | |||||||||||||||||||||   ||| ||||||||||||||||||    
T  20174061 ttattattagctgtagggttacttcaccgaaaaagtcaattttcgaacttcaccatagaattttcc 20174126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 32720174 - 32720222
Alignment:
Q  214 taacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcca 262  Q
    ||||||||||||||||||||||| || || || ||| ||||||||||||    
T  32720174 taacttcaccgaaaaagtcaattgaataactttaccgtagaattttcca 32720222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 30089130 - 30089270
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattatt---agttgaaggataacttc 220  Q
    ||||| || |||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    || | |||||||||||    
T  30089130 ctacggtggaacatattgagcaggtacacagtacatatcatgcaacaatcagcacacatgacatgtggcacattattattggatgtaggaggataacttc 30089229  T
Q  221 accgaaaaagtcaattaaagaaattcaccatagaattttcc 261  Q
    || ||||||||||||| ||  | ||||||||||||||||||    
T  30089230 actgaaaaagtcaattgaaagacttcaccatagaattttcc 30089270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 13800777 - 13800643
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    |||||||| |||||||||||| |||||||| |||||||||||| |||||||||||| ||| |||||| | |||||||||| | || ||  |||||||||     
T  13800777 ctacgatggaacatattgagcaggtacacaatacataccatgcaacaatcagcacaaatgccatgtgacgcattattattggatgtagagtaacttcact 13800678  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||||||||| ||  | |||||||||||||||    
T  13800677 gaaaaagtcaattgaatgacttcaccatagaattt 13800643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 271
Target Start/End: Complemental strand, 3877694 - 3877559
Alignment:
Q  137 atattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaat 235  Q
    ||||||||| |||||||| |||||| ||| | ||||||| ||||||||| | |||||||||||||||| | || ||| |||||||||||||||| |||||    
T  3877694 atattgagcaggtacacattacataacattcaacaatcaacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaaatcaat 3877595  T
Q  236 taaagaaattcaccatagaattttccaaattataaa 271  Q
    | ||  | ||||||||||||||| || || ||||||    
T  3877594 tgaacgacttcaccatagaatttccccaaatataaa 3877559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 1786591 - 1786494
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatag 253  Q
    |||||| |||| ||||||||||||||||||| ||||| |||||||||||| || | | |||||||||  |||||||||||| || || ||||||||||    
T  1786591 acatactatgcaacaatcagcacacatgacacgtggcgcattattattagatgtatggtaacttcacaaaaaaagtcaattgaacaacttcaccatag 1786494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 30936734 - 30936662
Alignment:
Q  188 gtggcacattattattagttgaaggat-aacttcaccgaaaaagtcaattaaagaaattcaccatagaatttt 259  Q
    |||||||||||||||| | || ||||| || || ||||||||||||||||||| || ||||||||||||||||    
T  30936734 gtggcacattattattggatgtaggattaattttaccgaaaaagtcaattaaataacttcaccatagaatttt 30936662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 533713 - 533785
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||| |||||||||| | || ||||||||||| | ||||||||||||| ||  | |||||||||||||||    
T  533713 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaattt 533785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 12945420 - 12945554
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    ||||| || |||||||||||| ||||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | || |||||||||||| |    
T  12945420 ctacggtggaacatattgagcaggtacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatc 12945519  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||||||||| || || |||||||||||||||    
T  12945520 gaaaaagtcaattgaacaacttcaccatagaattt 12945554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 33213552 - 33213418
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    |||||||| |||||||||||| |||||||| |||||||||||| |||||||||||||||||||| || |||||||||||| | || | | |||||||| |    
T  33213552 ctacgatggaacatattgagcaggtacacaatacataccatgcaacaatcagcacacatgacatatgacacattattattggatgtatggtaacttcatc 33213453  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||||||||||||  | || ||||||||||||    
T  33213452 gaaaaagtcaattaaatgactttaccatagaattt 33213418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 29835735 - 29835859
Alignment:
Q  135 acatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtca 233  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||||| |||||| | |||||||||| | || ||| ||||||||| ||||||||||    
T  29835735 acatattgagcaggtacacaatacataccatgcaacaatcagcacacatgccatgtgacgcattattattggatgtagggtaacttcactgaaaaagtca 29835834  T
Q  234 attaaagaaattcaccatagaattt 258  Q
    ||| ||  | |||||||||||||||    
T  29835835 attgaatgacttcaccatagaattt 29835859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 29702494 - 29702392
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 255  Q
    |||||| |||| |||||||||||||||||||| |||||||||||||||   |  ||| ||||||||||||||||||||||| || || ||||||||||||    
T  29702494 acatactatgcaacaatcagcacacatgacatatggcacattattattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaa 29702395  T
Q  256 ttt 258  Q
    |||    
T  29702394 ttt 29702392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 262
Target Start/End: Original strand, 55406336 - 55406464
Alignment:
Q  134 aacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtc 232  Q
    |||||||||||| ||||||||||  ||||| ||| ||||||| ||||||||| | |||||||||||||||| | || ||| |||||||||||||||| ||    
T  55406336 aacatattgagcaggtacacagtggataccgtgcaacaatcaacacacatgatacgtggcacattattattggatgtagggtaacttcaccgaaaaa-tc 55406434  T
Q  233 aattaaagaaattcaccatagaattttcca 262  Q
    |||| || || || ||||| ||||||||||    
T  55406435 aattgaacaactttaccatcgaattttcca 55406464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 20108051 - 20108146
Alignment:
Q  163 atgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    |||| ||||| | |||||||||||| |||| |||||||||| | || | |||||||||||| |||||||||||| || || |||||||||||||||    
T  20108051 atgcaacaataaacacacatgacatatggcgcattattattggatgtaagataacttcaccaaaaaagtcaattgaataacttcaccatagaattt 20108146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 53284241 - 53284290
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattag 205  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  53284241 acatactatgcaacaatcagcacacatgacatgtggcgcattattattag 53284290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 5234704 - 5234806
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 255  Q
    |||||| |||| ||||| | |||||||||||  |||| ||||||||||   || |||||||||||| | |||||||||||| || || ||||||||| ||    
T  5234704 acatactatgcaacaataaacacacatgacacatggcgcattattattgaatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaa 5234803  T
Q  256 ttt 258  Q
    |||    
T  5234804 ttt 5234806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 39831276 - 39831199
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaa 263  Q
    ||||||| |||||||||| | || ||||||||| | | ||||||||||||| ||  | ||||||||||||||| ||||    
T  39831276 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaatttcccaa 39831199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 31654689 - 31654613
Alignment:
Q  189 tggcacattattattagtt-gaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 264  Q
    ||||||||||||||| | | | |||||||||||||||||||||| |||| ||  | |||||| |||||||| |||||    
T  31654689 tggcacattattattggatcgtaggataacttcaccgaaaaagttaattgaatgacttcaccgtagaatttcccaaa 31654613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 126 - 265
Target Start/End: Original strand, 6444109 - 6444249
Alignment:
Q  126 tacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccg 224  Q
    |||||||||||||||| ||| |||||| | |||||||||| | ||||||| ||||||||||||||||| ||||||||||   || |||||||||||||||    
T  6444109 tacgatgaaacatatttagcaggtacatactacataccattcaacaatcaacacacatgacatgtggcgcattattattgaatgtaggataacttcaccg 6444208  T
Q  225 aaaaagtcaattaaagaaattcaccatagaattttccaaat 265  Q
    |||||||||||| ||  | ||||||||||||||| ||||||    
T  6444209 aaaaagtcaattgaatgacttcaccatagaatttcccaaat 6444249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 34095842 - 34095932
Alignment:
Q  168 acaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||| ||||||||||| ||||| ||||||||||   || |||||||||||||| |||||||||||| ||  | |||||||||||||||    
T  34095842 acaatcaacacacatgacacgtggcgcattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaattt 34095932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 47329643 - 47329745
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 255  Q
    |||||| |||| ||||| | |||||||||||  |||| |||||||||| | || |||||||||||| | |||||||||||| || || ||||||||| ||    
T  47329643 acatactatgcaacaataaacacacatgacacatggcgcattattattggatgtaggataacttcatcaaaaaagtcaattgaataacttcaccataaaa 47329742  T
Q  256 ttt 258  Q
    |||    
T  47329743 ttt 47329745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 45974452 - 45974533
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaatta 267  Q
    ||||||| |||||||||| | || ||||||||||| | ||||||||||||| ||  | ||||||||||||||| ||||||||    
T  45974452 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaatta 45974533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 29245281 - 29245353
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||| |||||||||| | || ||||||||||| | ||||||||||||| || || |||||||||||||||    
T  29245281 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaataacttcaccatagaattt 29245353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 29263416 - 29263490
Alignment:
Q  188 gtggcacattattattagttgaaggat-aacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 261  Q
    |||||||||||||||| | || ||||| || || ||||||||| ||||||||| || ||||||||||||||||||    
T  29263416 gtggcacattattattggatgtaggattaattttaccgaaaaaatcaattaaataacttcaccatagaattttcc 29263490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 8419403 - 8419443
Alignment:
Q  221 accgaaaaagtcaattaaagaaattcaccatagaattttcc 261  Q
    |||||||||||||||| ||||| ||||||||| ||||||||    
T  8419403 accgaaaaagtcaattgaagaacttcaccataaaattttcc 8419443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 125 - 267
Target Start/End: Complemental strand, 24227007 - 24226864
Alignment:
Q  125 ctacgatgaaacatattgagcgg-tacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    ||||| || |||||||||||| | ||||| ||||||||||| |||||||  |||||||||||||||||| |||||||||| | || |||||||||||| |    
T  24227007 ctacggtggaacatattgagcagatacacggtacataccattccacaatttgcacacatgacatgtggcgcattattattggatgtaggataacttcatc 24226908  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattttccaaatta 267  Q
    ||||||||||||| || || ||||||||||||||| || |||||    
T  24226907 gaaaaagtcaattgaacaacttcaccatagaatttccctaatta 24226864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 15530165 - 15530058
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 255  Q
    |||||| |||| ||||||||||||||||||||||| |||||| |||||   |  ||| ||||||||||||||||||||||| || || ||||||||||||    
T  15530165 acatactatgcaacaatcagcacacatgacatgtgacacatttttattgaatttagggtaacttcaccgaaaaagtcaattgaacaacttcaccatagaa 15530066  T
Q  256 ttttccaa 263  Q
    ||| ||||    
T  15530065 tttcccaa 15530058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 45988245 - 45988119
Alignment:
Q  133 aaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagt 231  Q
    ||||||||| ||| |||||| | ||| |||||| | ||||||| ||||||||||||||||| ||| ||||||   || ||||||||||||||||||||||    
T  45988245 aaacatatttagcaggtacatactacgtaccattcaacaatcaacacacatgacatgtggcgcatcattattgaatgtaggataacttcaccgaaaaagt 45988146  T
Q  232 caattaaagaaattcaccatagaattt 258  Q
    ||||| ||  | ||||||||| |||||    
T  45988145 caattgaatgacttcaccataaaattt 45988119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 42063108 - 42063006
Alignment:
Q  156 acataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaa 255  Q
    ||||||||| | ||||||| ||||||||||| |||||  |||||||||   || |||||||||||||| |||||||||||| ||  | ||||||||||||    
T  42063108 acataccattcaacaatcaacacacatgacacgtggcgtattattattgaatgtaggataacttcaccaaaaaagtcaattgaatgacttcaccatagaa 42063009  T
Q  256 ttt 258  Q
    |||    
T  42063008 ttt 42063006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 47028237 - 47028103
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    ||||| || |||||||| ||| |||||| | |||||||||| | ||||||| ||||||| ||| |||||  |||||||||   || ||||||||||||||    
T  47028237 ctacggtggaacatatttagcaggtacatactacataccattcaacaatcaacacacattacacgtggcgaattattattgaatgtaggataacttcacc 47028138  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
     |||||||||||| ||  | |||||||||||||||    
T  47028137 aaaaaagtcaattgaatgacttcaccatagaattt 47028103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 28683092 - 28683158
Alignment:
Q  194 cattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttcc 261  Q
    |||||||||| | || ||||||||||||||||||| ||||||| ||| | ||||||||||||||||||    
T  28683092 cattattattggatgtaggataacttcaccgaaaa-gtcaatttaaggacttcaccatagaattttcc 28683158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 20135440 - 20135512
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||| |||||||||| | || ||||||||| | | ||||||||||||| ||  | |||||||||||||||    
T  20135440 atgtggcgcattattattggatgtaggataactgctctgaaaaagtcaatttaatgacttcaccatagaattt 20135512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 1893 - 2027
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    |||||||| |||||||| ||| |||||| | |||||||||| | ||||||| ||||||||||||||||| ||||||||||   || |||||||||||||     
T  1893 ctacgatggaacatatttagcaggtacatactacataccattcaacaatcaacacacatgacatgtggcgcattattattgaatgtaggataacttcact 1992  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
    ||||||||||||| ||  | |||||| ||||||||    
T  1993 gaaaaagtcaattgaatgacttcaccgtagaattt 2027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 7116 - 6982
Alignment:
Q  125 ctacgatgaaacatattgagc-ggtacacagtacataccatgccacaatcagcacacatgacatgtggcacattattattagttgaaggataacttcacc 223  Q
    ||||| || |||||||| ||| |||||| | |||||||||| | ||||||| ||||||| ||| |||||  |||||||||   || ||||||||||||||    
T  7116 ctacggtggaacatatttagcaggtacatactacataccattcaacaatcaacacacattacacgtggcgaattattattgaatgtaggataacttcacc 7017  T
Q  224 gaaaaagtcaattaaagaaattcaccatagaattt 258  Q
     |||||||||||| ||  | |||||||||||||||    
T  7016 aaaaaagtcaattgaatgacttcaccatagaattt 6982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 25167 - 25089
Alignment:
Q  186 atgtggcacattattattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 264  Q
    ||||||| |||||||||| | || ||||||||||| | ||||||||||||| ||  | ||||||||||||||| |||||    
T  25167 atgtggcgcattattattggatgtaggataacttctctgaaaaagtcaatttaatgacttcaccatagaatttcccaaa 25089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 6693 - 6628
Alignment:
Q  199 ttattagttgaaggataacttcaccgaaaaagtcaattaaagaaattcaccatagaattttccaaa 264  Q
    ||||||| || ||||| ||||||||||| |||||| || || || ||||||||||||||| |||||    
T  6693 ttattagctgtaggattacttcaccgaagaagtcattttaacaacttcaccatagaatttcccaaa 6628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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