View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1341R-Insertion-14 (Length: 358)

Name: NF1341R-Insertion-14
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1341R-Insertion-14
NF1341R-Insertion-14
[»] chr4 (1 HSPs)
chr4 (9-358)||(48115156-48115510)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 358
Target Start/End: Original strand, 48115156 - 48115510
Alignment:
Q  9 cttttcttccatactcttattttcatgtcctatcttattcaatgtgtttctcttaactgttatataaaacatcttacttttcttctcaatgaaacagaat 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48115156 ctttgcttccatactcttattttcatgtcctatcttattcaatgtgtttctcttaactgttatataaaacatcttacttttcttctcaatgaaacagaat 48115255  T
Q  109 aaaaa-gatttaaagctatatgagttggacagaaaatccatgtgactgtattccttattgtttgcctaag----taagtaattcggtcattattcctagg 203  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||||||    
T  48115256 aaaaaagatttaaagctatatgagttggacagaaaatccatgtgactgtattccctattgtttgcctaagtaagtaagtaattcggtcattattcctagg 48115355  T
Q  204 tactctgaatttcttcttcctcacatgttttgtccatctttcgataccaaacaaaccactaaataaaatctcaatcattaaccaaatcaaaacaatacca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48115356 tactctgaatttcttcttcctcacatgttttgtccatctttcgataccaaacaaaccactaaataaaatctcaatcattaaccaaatcaaaacaatacca 48115455  T
Q  304 tggatctaccacacgattcacataattatatgtctttacttgccacgatcaatat 358  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48115456 tggatctaccacacgattcacataattatatgtcttttcttgccacgatcaatat 48115510  T

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