View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341R-Insertion-15 (Length: 337)
Name: NF1341R-Insertion-15
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341R-Insertion-15 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 43061793 - 43062123
Alignment:
| Q |
7 |
cacacttcatgatggtataacatgtttaacaatgaatgaataaacaaataacaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaa |
106 |
Q |
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| T |
43061793 |
cacactacatgatggtataacatgtttaacaatgaatgaataaacaaataaaaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaa |
43061892 |
T |
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| Q |
107 |
ctaaaataaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttgtcgggcaaaacccgggtgaaggtaaaggttgcattat |
206 |
Q |
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| T |
43061893 |
ctaaaataaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttttcgggcaaaacccgggtgaaggtaaaggttgcattat |
43061992 |
T |
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| Q |
207 |
tgtttaatttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagctt |
306 |
Q |
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| T |
43061993 |
tgtttgatttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagctt |
43062092 |
T |
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| Q |
307 |
cacatagataccataaactccaacactcttg |
337 |
Q |
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| T |
43062093 |
cacatagataccataaactccaacactcttg |
43062123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 216 - 336
Target Start/End: Original strand, 43054751 - 43054871
Alignment:
| Q |
216 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
315 |
Q |
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| T |
43054751 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
43054850 |
T |
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| Q |
316 |
accataaactccaacactctt |
336 |
Q |
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| T |
43054851 |
atcataaactccaacattctt |
43054871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 337
Target Start/End: Original strand, 43049217 - 43049338
Alignment:
| Q |
216 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
315 |
Q |
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| T |
43049217 |
tcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
43049316 |
T |
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| Q |
316 |
accataaactccaacactcttg |
337 |
Q |
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| T |
43049317 |
atcataaacttcatcactcttg |
43049338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 43024145 - 43024186
Alignment:
| Q |
295 |
gaagtagagcttcacatagataccataaactccaacactctt |
336 |
Q |
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| T |
43024145 |
gaagtagagtttcacatagatatcataaacttcaacactctt |
43024186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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