View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341R-Insertion-18 (Length: 275)
Name: NF1341R-Insertion-18
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341R-Insertion-18 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 121 - 275
Target Start/End: Original strand, 17080860 - 17081014
Alignment:
| Q |
121 |
aatttaacaagcttttataacaaaagattcaatggatacggaatttgaattcaaaattaatcttttccctttcatatatacaaattacgcatccacccct |
220 |
Q |
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| T |
17080860 |
aatttaacaagcttttataacaaaagattcaatggatacggaatttgaattcaaaattaatcttttccctttcatatatacaaattacgcatccacccct |
17080959 |
T |
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| Q |
221 |
tcttctataaattcagatctcttcttttggtatttttcatttgtcaactcaccat |
275 |
Q |
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| T |
17080960 |
tcttctataaattcagatctcttcttttggtatttttcatttgtcaactcaccat |
17081014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 17080716 - 17080844
Alignment:
| Q |
8 |
atatccctcattgcttttgattaggacgaatttccccttctctgttgctttctatcaagtgacattttaaatgacatttaacaatgtgtcataattagtc |
107 |
Q |
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| T |
17080716 |
atatccctcattgcttttgattaggacgaatttccccttctctgttgctttctatcaagtgacattttaaatgacatttaacaatgtgtcataattagtc |
17080815 |
T |
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| Q |
108 |
gtgcaaaaaatgaaatttaacaagctttt |
136 |
Q |
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| T |
17080816 |
gtgcaaaaaatgaaatttaacaagctttt |
17080844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 28788910 - 28789104
Alignment:
| Q |
16 |
cattgcttttgattaggacgaatttccccttctctgttgctttctatcaagtgacattttaaatgacatttaacaatgtgtcataattagtcgtgcaaaa |
115 |
Q |
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| T |
28788910 |
cattgcttttgattaggaaagatttgcccttccatgttgctttctattaagtgacatttaacaagacattt---aatgtaacataatcagtcgtaccata |
28789006 |
T |
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| Q |
116 |
aatgaaatttaacaagcttttataacaaaagattcaat-ggatacggaatttgaattcaaaattaatcttttccctttcatatatacaaattacgcatcc |
214 |
Q |
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| T |
28789007 |
gatgaaatttaacatacttttataactagagattcaatgggatatggaatacaaattcgaaattaatattt--cctcccatatatacaaattacgcatcc |
28789104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 272
Target Start/End: Original strand, 5494714 - 5494913
Alignment:
| Q |
74 |
ttaaatgacatttaacaatgtgtcataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaatgg-atacggaatttgaattc |
172 |
Q |
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| T |
5494714 |
ttaagtgacatttaataacgtgtcataactagttttgacataaatgaaatttattaggcttttataaaaagagattcaacgacatacgaaatttgaattc |
5494813 |
T |
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| Q |
173 |
aaaattaatcttttccctttcatatatacaaattacgcatccaccccttcttctataaattcagatctcttcttttggtatttttcatttgtcaactcac |
272 |
Q |
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| T |
5494814 |
aaaattaacattttccctcccaaatatacaaattacacattcacccattcttctataaatttagatctctacttttggaatctctcatttatcaactcac |
5494913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 273
Target Start/End: Original strand, 22818635 - 22818835
Alignment:
| Q |
74 |
ttaaatgacatttaacaatgtgtcataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaat-ggatacggaatttgaattc |
172 |
Q |
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|||| ||||||||||||| ||| |||||||||||| | | |||| |||||||||| |||||||||| | ||| ||||| ||||| | ||| |||||| |
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| T |
22818635 |
ttaagtgacatttaacaacgtgccataattagtcgaaccataaataaaatttaacatacttttataactagagactcaatgggatatgaaatacgaattc |
22818734 |
T |
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| Q |
173 |
aaaattaatcttttccctttcatatatacaaattacgcatccaccccttcttctataaattcagatctcttcttttggtatttttcatttgtcaactcac |
272 |
Q |
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| T |
22818735 |
gaaattattcttttcccttcgatatatacaaattatgcatccattcgttactctataaattcaaatctttgcttttggtatctctcatttgtcaactcac |
22818834 |
T |
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| Q |
273 |
c |
273 |
Q |
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| T |
22818835 |
c |
22818835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 269
Target Start/End: Original strand, 5508026 - 5508222
Alignment:
| Q |
74 |
ttaaatgacatttaacaatgtgtcataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaatg-gatacggaatttgaattc |
172 |
Q |
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|||| |||||||||||||||||||||||||||| || | |||| ||||||| | | ||||||||||| ||||||| || ||| | ||||||||||| |
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| T |
5508026 |
ttaagtgacatttaacaatgtgtcataattagttttgacataaataaaatttattaggattttataacaagagattcattgagatgtgaaatttgaattc |
5508125 |
T |
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| Q |
173 |
aaaattaatcttttccctttcatatatacaaattacgcatccaccccttcttctataaattcagatctcttcttttggtatttttcatttgtcaact |
269 |
Q |
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|||||||| ||| |||| || |||||||||||| |||||| |||||||| |||||||||| |||| | ||||||| || |||||| |||||||| |
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| T |
5508126 |
aaaattaacatttcccctcccaaatatacaaattatacatccatcccttcttatataaattcatatctatgcttttggaatctttcatctgtcaact |
5508222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 273
Target Start/End: Original strand, 22803348 - 22803524
Alignment:
| Q |
97 |
cataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaatg-gatacggaatttgaattcaaaattaatcttttccctttcat |
195 |
Q |
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| T |
22803348 |
cataattagtcgtaccataaatgaaatttaacagacttttataactaaagattcaatgagata-tgaaaacgaatttgaaattaatcttttccctcccaa |
22803446 |
T |
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| Q |
196 |
atatacaaattacgcatccaccccttcttctataaattcagatctcttcttttggtatttttcatttgtcaactcacc |
273 |
Q |
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|||||||||||||||| || | ||| | ||||||| || || | | |||||||||| | ||||||||||| ||||| |
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| T |
22803447 |
atatacaaattacgcacccgtcagttcctgtataaatacaaatttttgcttttggtatctctcatttgtcaattcacc |
22803524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 267
Target Start/End: Complemental strand, 26450678 - 26450485
Alignment:
| Q |
74 |
ttaaatgacatttaacaatgtgtcataattagtcgtgcaaaaaatgaaatttaacaagcttttataacaaaagattcaatgg-atacggaatttgaattc |
172 |
Q |
| |
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|||| ||||||||||| |||||||||||||| ||| | |||||||| |||| | ||||||||||||| ||||||||||| ||| | |||| ||||| |
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| T |
26450678 |
ttaagtgacatttaac---gtgtcataattagttgtgtcataaatgaaaattaaaaggcttttataacaatagattcaatgggatatgaaattcgaattt |
26450582 |
T |
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| Q |
173 |
aaaattaatcttttccctttcata--tatacaaattacgcatccaccccttcttctataaattcagatctcttcttttggtatttttcatttgtcaa |
267 |
Q |
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| T |
26450581 |
aaaattaattttttttccttcctaaatatacgaattacgcatccacctcttcttctataaattgagatatctgtttttgttatctatcatttgtcaa |
26450485 |
T |
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