View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341R-Insertion-19 (Length: 212)
Name: NF1341R-Insertion-19
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341R-Insertion-19 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 44928191 - 44927988
Alignment:
| Q |
9 |
ataagttgtgtctataagttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaattagcttaatataaacaagcccctaacgttacag |
108 |
Q |
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| T |
44928191 |
ataagttgtttctataagttcttccaaacaatcttacaagtgcttatactagtaaataagctcaaattagcttaatataaacaagcccctaacgttacag |
44928092 |
T |
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| Q |
109 |
caaatgacatgaatagtgtttaaagtcaaatataccttttcctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatcacttt |
208 |
Q |
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| T |
44928091 |
caaatgacatgaatagtgtttaaagtcaaatataccttttcctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatcacttt |
44927992 |
T |
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| Q |
209 |
tttc |
212 |
Q |
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|||| |
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| T |
44927991 |
tttc |
44927988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 44936468 - 44936415
Alignment:
| Q |
150 |
ctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatc |
203 |
Q |
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| T |
44936468 |
ctttgcctctctcatgtcctccatgtttaaaggcctgagggcaatcacttgatc |
44936415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 45989847 - 45989794
Alignment:
| Q |
150 |
ctttgcctgtctcatgtcttccatgtttagaggcctgagggcaatcacttgatc |
203 |
Q |
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| T |
45989847 |
ctttgcctgtctcatgtcttccatgttcaaaggccggagggaaatcacttgatc |
45989794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 31517727 - 31517674
Alignment:
| Q |
22 |
ataagttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaat |
75 |
Q |
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| T |
31517727 |
ataagttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaat |
31517674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 36189712 - 36189765
Alignment:
| Q |
22 |
ataagttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaat |
75 |
Q |
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| T |
36189712 |
ataagttcctccaaacagtctcacaagtgcttatactagtaaataagctcaaat |
36189765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 2620903 - 2620853
Alignment:
| Q |
27 |
ttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaatta |
77 |
Q |
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|||| ||||||||| ||| |||| || |||||||||||||||||||||||| |
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| T |
2620903 |
ttctcccaaacaatattaaaagttcttatactagtaaataagctcaaatta |
2620853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 45541654 - 45541707
Alignment:
| Q |
22 |
ataagttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaat |
75 |
Q |
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||||||||||| ||||| ||||||||||| | |||| | ||||||||||||||| |
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| T |
45541654 |
ataagttcttctaaacagtcttacaagtgtttataccattaaataagctcaaat |
45541707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 25459616 - 25459564
Alignment:
| Q |
23 |
taagttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaat |
75 |
Q |
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|||| ||||||||||||||| ||||||||| || ||||| |||||||||||| |
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| T |
25459616 |
taagctcttccaaacaatctcacaagtgcttatgctagttgataagctcaaat |
25459564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 14599372 - 14599306
Alignment:
| Q |
9 |
ataagttgtgtctataagttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaat |
75 |
Q |
| |
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||||||||| || ||||| ||| |||||||||||||||||| | || |||||||||||| |||||| |
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| T |
14599372 |
ataagttgtttcgataagctctctcaaacaatcttacaagtgtttatgctagtaaataagttcaaat |
14599306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 32172723 - 32172789
Alignment:
| Q |
9 |
ataagttgtgtctataagttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaat |
75 |
Q |
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||||||||| || ||||| ||| |||||| |||| ||||||||| || |||||| |||||||||||| |
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| T |
32172723 |
ataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaat |
32172789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 25487544 - 25487491
Alignment:
| Q |
22 |
ataagttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaat |
75 |
Q |
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||||| ||||||||||||||||||||||||| || ||| || |||| ||||||| |
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| T |
25487544 |
ataagctcttccaaacaatcttacaagtgcttatgctaatagataaactcaaat |
25487491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 48157120 - 48157032
Alignment:
| Q |
9 |
ataagttgtgtctataagttcttccaaacaatcttacaagtgctaatactagtaaataagctcaaattag-cttaatataaacaagccc |
96 |
Q |
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||||||||| |||||||| ||| ||||||| ||| |||| |||| | | ||||||||||||||||| || |||||| |||||||||| |
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| T |
48157120 |
ataagttgtttctataagctctcccaaacagtctcacaaatgcttaaatcagtaaataagctcaaataagtcttaatccaaacaagccc |
48157032 |
T |
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