View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1341R-Insertion-21 (Length: 178)

Name: NF1341R-Insertion-21
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1341R-Insertion-21
NF1341R-Insertion-21
[»] chr1 (4 HSPs)
chr1 (9-176)||(51458500-51458667)
chr1 (9-116)||(30204068-30204175)
chr1 (9-116)||(51483068-51483175)
chr1 (9-116)||(51499905-51500012)
[»] chr5 (3 HSPs)
chr5 (9-178)||(43162770-43162939)
chr5 (9-116)||(27398540-27398647)
chr5 (9-116)||(20866760-20866867)
[»] scaffold0020 (1 HSPs)
scaffold0020 (9-116)||(135504-135611)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 4e-83; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 51458500 - 51458667
Alignment:
Q  9 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51458500 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa 51458599  T
Q  109 agcaggtagaaccggcttagacaattttccattatctagttatagggatgcccctcatgaccatttac 176  Q
    ||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||    
T  51458600 agcaggtagaaccggcttagacaattttccattatctagctctatggatgcccctcatgaccatttac 51458667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 30204175 - 30204068
Alignment:
Q  9 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa 108  Q
    ||||||||||||||||||||||||||||||||||| |||||| | |||||| || |||||||||||||||||||||| |||||| |||||  ||||||||    
T  30204175 gctctctgggatatttttcggagagaggatgtacctaaattggaagaatatttaaagaagcatttcagagagttcaggcatgtctattgctctcctttaa 30204076  T
Q  109 agcaggta 116  Q
    ||||||||    
T  30204075 agcaggta 30204068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 51483068 - 51483175
Alignment:
Q  9 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa 108  Q
    ||||| |||||||||||||||||||||||||||||  ||||| |||||||| || |||||||||||| ||||||||| |||||| |||||  ||||||||    
T  51483068 gctctttgggatatttttcggagagaggatgtacctgaattggaggaatatttaaagaagcatttcaaagagttcaggcatgtccattgctctcctttaa 51483167  T
Q  109 agcaggta 116  Q
    ||||||||    
T  51483168 agcaggta 51483175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 51499905 - 51500012
Alignment:
Q  9 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa 108  Q
    |||||||||||||||||||||||||||||||| || || ||| |||||||| || |||||||||||||||||||||| |||||| | | |  ||||||||    
T  51499905 gctctctgggatatttttcggagagaggatgttcctaagttggaggaatatttaaagaagcatttcagagagttcaggcatgtccactcctctcctttaa 51500004  T
Q  109 agcaggta 116  Q
    ||||||||    
T  51500005 agcaggta 51500012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 7e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 43162770 - 43162939
Alignment:
Q  9 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||||    
T  43162770 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatataaaaaagcatttcagagagttcagacatgtcaattgcagtcctttaa 43162869  T
Q  109 agcaggtagaaccggcttagacaattttccattatctagttatagggatgcccctcatgaccatttactt 178  Q
    |||||||| || | ||||||||||||||||||||||||| | || ||||||||||| ||| |||||||||    
T  43162870 agcaggtaaaatcagcttagacaattttccattatctagctctatggatgcccctcgtgatcatttactt 43162939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 27398540 - 27398647
Alignment:
Q  9 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa 108  Q
    ||||| |||||||||||||||||||||||||||||   |||| ||||||||||  |||||||||||||||||||||| |||||| |||||  |||||||     
T  27398540 gctctttgggatatttttcggagagaggatgtacctgcattgcaggaatatctgaagaagcatttcagagagttcaggcatgtccattgctctcctttag 27398639  T
Q  109 agcaggta 116  Q
    || |||||    
T  27398640 aggaggta 27398647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 20866867 - 20866760
Alignment:
Q  9 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa 108  Q
    |||| ||||||||||||||||||||||||||| || |||||||||||||||||  |||||||||   |||||||||| ||| || ||||   ||||||||    
T  20866867 gctcactgggatatttttcggagagaggatgtgccgaaattgaaggaatatctgaagaagcattctggagagttcaggcatatctattgttctcctttaa 20866768  T
Q  109 agcaggta 116  Q
    ||||||||    
T  20866767 agcaggta 20866760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 72; Significance: 5e-33; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 135611 - 135504
Alignment:
Q  9 gctctctgggatatttttcggagagaggatgtacccaaattgaaggaatatctagagaagcatttcagagagttcagacatgtcaattgcattcctttaa 108  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| ||| || |||||  ||||||||    
T  135611 gctctctgggatatttttcggagagaggatgtacctaaattgaaggaatatctgatgaagcatttcagagagttcaggcatatctattgctctcctttaa 135512  T
Q  109 agcaggta 116  Q
    ||||||||    
T  135511 agcaggta 135504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University