View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341R-Insertion-3 (Length: 1085)
Name: NF1341R-Insertion-3
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341R-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 137 - 417
Target Start/End: Complemental strand, 1330296 - 1330016
Alignment:
| Q |
137 |
tacttcggttctcaataaaatatttggtatgttttttcttatatgatttcaaggagttggtgtttctcctaataaagagaattttgttgaagtttatgag |
236 |
Q |
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| T |
1330296 |
tacttcggttctcaataaaatatttggtatgttttttcttatatgatttcaaggagttggtgtttctcctaataaagagaattttgttgaagtttatgag |
1330197 |
T |
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| Q |
237 |
gatgaaaataatggggttattagctacgggttaagatggtggaaaaattggcaaagaaattcatggttgttatcttctctgcattttcacttcaatttct |
336 |
Q |
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| T |
1330196 |
gatgaaaataatggggttattagctacgggttaagatggtggaaaaattggcaaagaaattcatggttgttatcttctctgcattttcaattcaatttct |
1330097 |
T |
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| Q |
337 |
ctctagttctacatggttttcaattctctgaatccatttgtgagacctctccttccttttatagttgaaattgaatctccg |
417 |
Q |
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| T |
1330096 |
ctctagttctacatggttttcaattctctgaatccatttgtgagacctctccttccttttatagttgaaattgaatctccg |
1330016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 673 - 1045
Target Start/End: Complemental strand, 1329137 - 1328768
Alignment:
| Q |
673 |
aacttttgtattttattgaaggagaatccaaatgtgcaattgaacctgtagtttcaactttcaactattgtttctttattgtactattcagtattagttt |
772 |
Q |
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| T |
1329137 |
aacttttgtatattattgaaggagaatccaaatgtgcaattgaacctgtagtttcaactttcaactattgtttctttattgtactattcagtattagttt |
1329038 |
T |
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| Q |
773 |
ggtcttcacaaatataatgg-attagtgcactgttattaaaacaagtttgcttttatatgaaaatataaatatcatatatagttgaagcaagatgtacat |
871 |
Q |
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| T |
1329037 |
ggtcttcacaaatataatggaattagtgcactgttattaaaacaagtttgcttttatatgaaaatataaataccatatatagttgaagcaagatgtacat |
1328938 |
T |
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| Q |
872 |
ttagttcaaannnnnnnnnnctactggctaactttatttttaaactatataggaaatttaatattatgttggttaatcacaaaatatattgtcattactc |
971 |
Q |
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| T |
1328937 |
ttagttcaa-----ttttttctactggataactttattttttaactataatagaaatttaataatctgttgggtaaata-taaatatatcgtcattactc |
1328844 |
T |
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| Q |
972 |
atcagtg-tgttgaaac-aattggcatttattgtttggttactcaccgaccacataacatggttacatttttctta |
1045 |
Q |
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| T |
1328843 |
atcagtgttgttgagacaaatttgcatttatgttttgtttactcaccaacaacataacaatgttaccattttctta |
1328768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 487 - 572
Target Start/End: Complemental strand, 1329946 - 1329862
Alignment:
| Q |
487 |
gtaccataattgaaataaaaaagtgaggggaaatgtgtgggaaacctaacatggtgtactaatattctgtttttctttgtgtggcc |
572 |
Q |
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| T |
1329946 |
gtaccataattgaaataaaaa-gtgaggggaaatgtgtgggaaacctaacatggtgtactaatattctgtttttctttgtgtggcc |
1329862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 610 - 662
Target Start/End: Complemental strand, 1329824 - 1329772
Alignment:
| Q |
610 |
ttattttacatcaataaatagtaaagtagagtgtactagtattcattttatct |
662 |
Q |
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| T |
1329824 |
ttattttacatcaataaatagtaaagtagagtgtactagtattcattttatct |
1329772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 1330410 - 1330364
Alignment:
| Q |
19 |
tgaggaaaaaatgtgtttgttgttagagtgagtgggaaccccaatca |
65 |
Q |
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| T |
1330410 |
tgaggaaaaaatgtgtttgttgttagagtgagtgggaaccccaatca |
1330364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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