View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1341R-Insertion-4 (Length: 1028)
Name: NF1341R-Insertion-4
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341R-Insertion-4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 964; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 964; E-Value: 0
Query Start/End: Original strand, 9 - 1025
Target Start/End: Complemental strand, 808833 - 807818
Alignment:
| Q |
9 |
ctcacttccataacaggaaccacagttatacgggatccaggcatcacaacaccggttaaaactcgcagcacgtttgcagcatctatgtccatgcacacac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
808833 |
ctcacttccataacaggaaccacagttatacgggatccaggcatcacaacaccggttaaaactcgcagcacgtttgcagcatctatgtccatgcacacac |
808734 |
T |
|
| Q |
109 |
tgatttcaggaactccttttggtgctgcaggtattcccattatcttgaaatatcctaacaagtggttttcttctgccttctttccctcaccttcgtacac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
808733 |
tgatttcaggaactccttttggtgctgcaggtattcccattatcttgaaatatcctaacaagtggttttcttctgccttctttccctcaccttcgtacac |
808634 |
T |
|
| Q |
209 |
aagtatcaatgcctcagtttgattatcatgaatagttgtgaaaagtagatccttacgcgctggcattgtggtgttcctcggaattacaggtacaaacttg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
808633 |
aagtatcaatgcctcagtttgattatcatgaatagttgtgaaaagtagatccttacgcgctggcattgtggtgttcctcggaattacaggtacaaacttg |
808534 |
T |
|
| Q |
309 |
ttcccatcagctcggattccaatggcaagaggagtggcttgaatcgttaacaagtccaagtttccaaaaggatcactgatgcctgaagcaacagctcctt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
808533 |
ttcccatcagctcggattccaatggcaagaggagtggcttgaatcgttaacaagtccaagtttccaaaaggatcactgatgcctgaagcaacagctcctt |
808434 |
T |
|
| Q |
409 |
ccattgctgcaccacaaaccgcaccttccaaagggtttatacctttataaacttctgtaattttgcataagttggtaacaagattctccaccct--tggg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
808433 |
ccattgctgcaccacaaaccgcaccttccaaagggtttatacctttataaacttctgtaattttgcataagttggtaacaagattctccacccttgtggg |
808334 |
T |
|
| Q |
507 |
atatatgaacatccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcga |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
808333 |
atatatgaacatccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcga |
808234 |
T |
|
| Q |
607 |
acacctctttattcacctcctcaaactccgccctgtcaacaaccttgcatatcttcaaactatttcccaaatctacatcaacctgaacactgctttgggt |
706 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
808233 |
acacctctttgttcacctcctcaaactccgccctgtcaacaaccttgcatatcttcaaactatttcccaaatctacatcaacctgaacactgctttgggt |
808134 |
T |
|
| Q |
707 |
ggaaagctgatgaattgcatcctgggttgcaactcgaagcaatgccattgacttaatttcttcaaccccgtgacgcttgaatatattttcagaatctggt |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
808133 |
ggaaagctgatgaattgcatcctgggttgcaactcgaagcaatgccattgacttaatttcttcaaccccgtgacgcttgaatatattttcagaatctggt |
808034 |
T |
|
| Q |
807 |
aagagatggtgcatcatattctgaagcaaatcttctccaccgatggtacttcctgccaaggcttttatctgagatactcccccagcggtagcagtcacag |
906 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
808033 |
aagagatggcgcatcatattctgaagcaaatcttctccaccgatggtacttcctgccaaggcttttatctgagatactcccccagcggtagcagtcacag |
807934 |
T |
|
| Q |
907 |
caacatcacaataaccagcacccatattgaaaatgagagcaatttttctcacttccactgcccaatagtttcttgagagcttttctgttgttgctgtcca |
1006 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
807933 |
caacatcacaataaccagcacccatattgaaaatgagagcaa-ttttctcacttccactgccc-atagtttcttgagaagctttctgttgttgctgtcc- |
807837 |
T |
|
| Q |
1007 |
atataataacgccactgct |
1025 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
807836 |
atataataacgccactgct |
807818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 49 - 1003
Target Start/End: Complemental strand, 39242420 - 39241487
Alignment:
| Q |
49 |
gcatcacaacaccggttaaaactcgcagcacgtttgcagcatctatgtccatgcacacactgatttcaggaactccttttggtgctgcaggtattcccat |
148 |
Q |
| |
|
|||||| |||||| | |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| | |
|
|
| T |
39242420 |
gcatcataacaccagctaaaactctcat-acgtttgcagcatctatgtccatgcacacattgatttcaggaactccttttcgtgctgctggtattcccgt |
39242322 |
T |
|
| Q |
149 |
tatcttgaaatatcctaacaagtggttttcttctgccttctttccctcaccttcgtacacaagtatcaatgcctcagtttgattatcatgaatagttgtg |
248 |
Q |
| |
|
|||||||| |||||| ||||| || ||||||| |||| ||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
39242321 |
tatcttgatatatcccaacaactgattttctt---------------------cgtagacaagtatcaatgttgcagtttgattatcataaatagttgtg |
39242243 |
T |
|
| Q |
249 |
aaaagtagatccttacgcgctggcattgtggtgttcctcggaattacaggtacaaacttgttcccatcagctcggattccaatggcaagaggagtggctt |
348 |
Q |
| |
|
|||||||||||||| ||||| || ||| | |||||||| ||||| || || ||||||||||| ||||||||||| |||||||||||| | || ||||||| |
|
|
| T |
39242242 |
aaaagtagatccttgcgcgcgggaattctagtgttccttggaatcactgggacaaacttgtttccatcagctcgaattccaatggcatgcggtgtggctt |
39242143 |
T |
|
| Q |
349 |
gaatcgttaacaagtccaagtttccaaaaggatcactgatgcctgaagcaacagctccttccattgctgcaccacaaaccgcaccttccaaagggtttat |
448 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
39242142 |
gaatggttaataagtccaagtttccaaatggatcaatgatgcctaaagcaacagctccttctattgctgcaccacaaactgcaccttccaaaggatttat |
39242043 |
T |
|
| Q |
449 |
---acctttataaacttctgtaattttgcataagttggtaacaagattctccacccttgggatatatgaacatccaccaacaagtatcacatcatttata |
545 |
Q |
| |
|
|||||||||||||||||| | || ||||| ||||||||||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||| | |
|
|
| T |
39242042 |
tatacctttataaacttctgttacttcgcatatcttggtaacaagattcctcacccttgggatataagaacatccatcaacaattatcacatcatttaca |
39241943 |
T |
|
| Q |
546 |
tccccgacttctacctttgcatcatgtaaacattggatgataaggctttcacacttttcgaacacctctttattcacctcctcaaactccgccctgtcaa |
645 |
Q |
| |
|
||| | |||| ||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||| || ||||| ||||||||||| ||||| |||| |
|
|
| T |
39241942 |
tcctcaacttttacctttgcatcatgtaaacactggatgataaggctttcacattttccaaacacctgcttgttcacttcctcaaactctgccctatcaa |
39241843 |
T |
|
| Q |
646 |
caaccttgcatatcttcaaactatttcccaaatctacatcaacctgaacactgctttgggtggaaagctgatgaattgcatcctgggttgcaactcgaag |
745 |
Q |
| |
|
||||||||||||||||||||| || |||||| || ||||||||||||| | || |||| | ||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
39241842 |
caaccttgcatatcttcaaaccatctcccaagtccacatcaacctgaaaattgatttgagaggaaagccgatgaattgcatcatgggttgcaactcgaag |
39241743 |
T |
|
| Q |
746 |
caatgccattgacttaatttcttcaaccccgtgacgcttgaatatattttcagaatctggtaagagatggtgcatcatattctgaagcaaatcttctcca |
845 |
Q |
| |
|
|||||||| || |||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
39241742 |
taatgccatcgatttaatttctttaaccccgtgattcttgaatatgttttcagaatctggtaagagatgacacatcatattctgaagcaagtcctctcca |
39241643 |
T |
|
| Q |
846 |
ccgatggtacttcctgccaaggcttttatctgagatactcccccagcggtagcagtcacagcaacatcacaataaccagcacccatattgaaaatgagag |
945 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39241642 |
ccgatggtacttcctgccacagcttttatctcggatactcctccagccgtagcagtcacagcaacatcacaataaccagcacccatattgaaaatgagag |
39241543 |
T |
|
| Q |
946 |
caatttttctcacttccactgcccaatagtttcttgagagcttttctgttgttgctgt |
1003 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||| | ||| |||||||||||| |
|
|
| T |
39241542 |
caa-ctttctcacttccactgccc-atagtttcttgaaaagctttatgttgttgctgt |
39241487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 1e-47; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 47843607 - 47843446
Alignment:
| Q |
90 |
tctatgtccatgcacacactgatttcaggaactccttttggtgctgcaggtattcccattatcttgaaatatcctaacaagtggttttcttctgccttct |
189 |
Q |
| |
|
||||||| ||| | |||| | ||||| ||||||||| ||||||||||||||||||||||||| || |||||||| || | |||||||||||| ||||||| |
|
|
| T |
47843607 |
tctatgttcatacgcacattaatttctggaactcctcttggtgctgcaggtattcccattattttcaaatatcccaaaaggtggttttcttcagccttct |
47843508 |
T |
|
| Q |
190 |
ttccctcaccttcgtacacaagtatcaatgcctcagtttgattatcatgaatagttgtgaaa |
251 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47843507 |
gtccctcaccttcgtagacaaggatcaatgcctcagtttgattatcatgaatagttgtgaaa |
47843446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 390 - 946
Target Start/End: Complemental strand, 47843313 - 47842748
Alignment:
| Q |
390 |
cctgaagcaacagctccttccattgctgcaccacaaaccgcaccttccaaagggtttatacctttataaacttctgtaattttgcataagttggtaacaa |
489 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||||| ||| ||||||||||||| || |||||||||| ||| | |||||||| || ||||||| |
|
|
| T |
47843313 |
cctgcagcaacagctcctgccacagctgcaccacaaagtgcagcttccaaagggttcattcctttataaagttcctttcctttgcatattttagtaacaa |
47843214 |
T |
|
| Q |
490 |
gattctccacccttgggatatatgaacatccaccaacaagtatcacatcatttatatccccgacttctacctttgcatcatgtaaacattggatgataag |
589 |
Q |
| |
|
||| || |||| | || |||| ||||||||||||||| |||||||||||||||||| | |||| || | |||||| || || | ||||||||| || |
|
|
| T |
47843213 |
gatccttcaccttcggtatattccaacatccaccaacaattatcacatcatttatatcatcaacttttatatctgcatcttgcaagctttggatgatcag |
47843114 |
T |
|
| Q |
590 |
gctttcacacttttcgaacacctctttattcacctcctcaaactccgccctgtcaacaaccttgcatatcttcaaactatttcccaaatctacatcaacc |
689 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||||||||| |||| | |||||||| ||||| ||||||| || |||||| |||| ||||| | |
|
|
| T |
47843113 |
cctttcacacttttcaaacacctctttatttacatcctcaaactcctccctctttacaaccttacatattttcaaaccatctcccaagtctaaatcaaac |
47843014 |
T |
|
| Q |
690 |
tgaacactgctttgggtggaaagctgatgaattgcatcctgggttgcaactcgaagcaatgccattgacttaatttcttcaacccc------gtgacgct |
783 |
Q |
| |
|
| |||||| | || | |||||| | ||||| || || | |||| ||||||||||| |||||| ||| |||| || |||| || || |
|
|
| T |
47843013 |
tcaacacttgtctgagaggaaagtcgttgaatcgcttctagaattgccactcgaagcaaactcattgatttattttcctcgtccccatcaatatgcttct |
47842914 |
T |
|
| Q |
784 |
tgaatatattttcagaatctggtaagagatggtgcatcatattctgaagcaaatcttctccaccgatggtacttcctgccaaggctttta-tctgagata |
882 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| |||||| ||||||||||| | | |||||||||||| ||||| | |||| || |
|
|
| T |
47842913 |
tgaatatattttcagaatctggtaagagataacgtatcatattcacaagcaagtcttctccaccactagaacttcctgccaaagctttcattctg-catt |
47842815 |
T |
|
| Q |
883 |
ctcccccagcggtag---cagtcacagcaacatcacaataaccagcacccatattgaaaatgagagc |
946 |
Q |
| |
|
|||| | || |||| ||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
47842814 |
ctccttctgctgtagcaacagtcacagcaacatcacaataaccgaaatccatattgaaaatgagagc |
47842748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 90 - 251
Target Start/End: Original strand, 47878934 - 47879095
Alignment:
| Q |
90 |
tctatgtccatgcacacactgatttcaggaactccttttggtgctgcaggtattcccattatcttgaaatatcctaacaagtggttttcttctgccttct |
189 |
Q |
| |
|
|||||||||| |||| | |||| || |||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||||| | |
|
|
| T |
47878934 |
tctatgtccacacacaaattgatatctggaactccttttggtgctgcaggtattcccattatcttcaaatatcccaaaaagtggttttgttctgcctttt |
47879033 |
T |
|
| Q |
190 |
ttccctcaccttcgtacacaagtatcaatgcctcagtttgattatcatgaatagttgtgaaa |
251 |
Q |
| |
|
|| ||||||||||||| ||| | ||||| ||| ||||||||||||| | ||||||||||||| |
|
|
| T |
47879034 |
tttcctcaccttcgtagacacggatcaaggccacagtttgattatcgtaaatagttgtgaaa |
47879095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 90 - 338
Target Start/End: Original strand, 44727322 - 44727573
Alignment:
| Q |
90 |
tctatgtccatgcacacactgatttcaggaactccttttggtgctgcaggtattcccattatcttgaaatatcctaacaagtggttttcttctgccttct |
189 |
Q |
| |
|
|||||||||||| | ||| |||||| ||||| |||||||||||| ||||||| | ||| |||||||||||||| | ||||||||||| |||||| |
|
|
| T |
44727322 |
tctatgtccatggaaacaatgattttaggaaaaccttttggtgctttaggtatttcagttagtttgaaatatcctaaaagttggttttcttcaaccttct |
44727421 |
T |
|
| Q |
190 |
ttccctcaccttcgtacacaagtatcaatgcctcagtttgattatcatgaatagttgtgaaaagtagatcc---ttacgcgctggcattgtggtgttcct |
286 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||| |||| || | ||||| || |||||||| |
|
|
| T |
44727422 |
gtccctcaccttcgtaaacaacgatcaatgccgcagtttgattatcatgaatagttgtcaaaagtatatccgaattcatggttggcactggtgtgttcct |
44727521 |
T |
|
| Q |
287 |
cggaattacaggtacaaacttgttcccatcagctcggattccaatggcaaga |
338 |
Q |
| |
|
||||| | |||||||| ||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
44727522 |
tggaataattggtacaaatttgtttccatcagctcgaattccgatggcaaga |
44727573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 470 - 635
Target Start/End: Original strand, 44727696 - 44727861
Alignment:
| Q |
470 |
tttgcataagttggtaacaagattctccacccttgggatatatgaacatccaccaacaagtatcacatcatttatatccccgacttctacctttgcatca |
569 |
Q |
| |
|
|||||||| || ||||||||| |||| |||||||| |||| |||||||||| |||| ||||||||| ||||||| | | ||||||| ||||||||| |
|
|
| T |
44727696 |
tttgcatattttagtaacaagactctctacccttggtatattacaacatccacctacaattatcacatcgtttatattctcaacttctatctttgcatct |
44727795 |
T |
|
| Q |
570 |
tgtaaacattggatgataaggctttcacacttttcgaacacctctttattcacctcctcaaactcc |
635 |
Q |
| |
|
|||| ||||||||||| || ||||||| ||||| ||||||||||| || || |||||||||||| |
|
|
| T |
44727796 |
tgtatgcattggatgattagcttttcacaattttcaaacacctctttgtttacttcctcaaactcc |
44727861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 47844830 - 47844974
Alignment:
| Q |
90 |
tctatgtccatgcacacactgatttcaggaactccttttggtgctgcaggtattcccattatcttgaaatatcctaacaagtggttttcttctgccttct |
189 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||||||||||| |||||||| | |||| ||||||||||| || | ||| || ||||| |||||| |
|
|
| T |
47844830 |
tctatgtccatgctcacattgatttcaggagctccttttggtgcttcaggtatttcagttattttgaaatatcccaaaaggtgattctcttcaaccttct |
47844929 |
T |
|
| Q |
190 |
ttccctcaccttcgtacacaagtatcaatgcctcagtttgattat |
234 |
Q |
| |
|
| ||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
47844930 |
gtgcctcaccttcgtagacaatgatcaatgctgcagtttgattat |
47844974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 470 - 635
Target Start/End: Original strand, 47845193 - 47845359
Alignment:
| Q |
470 |
tttgcataagttggtaacaagattctccacccttgggatatatgaacatccaccaacaagtatcacatcatttatatccccgacttctacctttgcatca |
569 |
Q |
| |
|
|||||||| || ||||||||||||| |||| |||| |||| |||||||||| |||| ||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
47845193 |
tttgcatattttagtaacaagattcttcacc-ttggtatattacaacatccacctacaattatcacatcatttatattcttagtttccacctttgcatca |
47845291 |
T |
|
| Q |
570 |
tgtaaacattggatgataaggc--tttcacacttttcgaacacctctttattcacctcctcaaactcc |
635 |
Q |
| |
|
|| || ||||||||||| || | |||||||||| || ||||||||||| || || |||||||||||| |
|
|
| T |
47845292 |
tgcaagcattggatgattagcccctttcacacttctcaaacacctctttgtttacatcctcaaactcc |
47845359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 782 - 953
Target Start/End: Original strand, 42927005 - 42927176
Alignment:
| Q |
782 |
cttgaatatattttcagaatctggtaagagatggtgcatcatattctgaagcaaatcttctccaccgatggtacttcctgccaaggcttttatctgagat |
881 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| |||||||| | |||||||||||||| ||| || | |||||||| || ||||||||| || | |
|
|
| T |
42927005 |
cttgaatatatttttagaatcaggtaagagatgacaaatcatattttcaagcaaatcttctctaccaataggacttcctgtcagggcttttattcgaagt |
42927104 |
T |
|
| Q |
882 |
actcccccagcggtagcagtcacagcaacatcacaataaccagcacccatattgaaaatgagagcaattttt |
953 |
Q |
| |
|
|| | |||||| | |||||||||||||||||||||||| ||||||| |||| |||||||| |||| |
|
|
| T |
42927105 |
ttccctttttctgtagcaatgacagcaacatcacaataaccagcatccatattaaaaacgagagcaactttt |
42927176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 874
Target Start/End: Original strand, 44728002 - 44728094
Alignment:
| Q |
782 |
cttgaatatattttcagaatctggtaagagatggtgcatcatattctgaagcaaatcttctccaccgatggtacttcctgccaaggcttttat |
874 |
Q |
| |
|
||||||||||||||| |||| || |||||||| ||||||||| |||||||||||||||||| || | |||||||||||| |||||||| |
|
|
| T |
44728002 |
cttgaatatattttcgtaatcgggaaagagatgacacatcatatttccaagcaaatcttctccaccaatagcacttcctgccaacgcttttat |
44728094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 42926407 - 42926476
Alignment:
| Q |
183 |
gccttctttccctcaccttcgtacacaagtatcaatgcctcagtttgattatcatgaatagttgtgaaaa |
252 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||| ||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
42926407 |
gccttctctccctcaccttcgatgacaactatcaacgcctcagtttgataatcatgaattgttgtaaaaa |
42926476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 470 - 543
Target Start/End: Original strand, 47879344 - 47879417
Alignment:
| Q |
470 |
tttgcataagttggtaacaagattctccacccttgggatatatgaacatccaccaacaagtatcacatcattta |
543 |
Q |
| |
|
|||||||| || ||||||||||||| ||||||||| |||| ||||||||||||||| ||| |||||||||| |
|
|
| T |
47879344 |
tttgcatattttagtaacaagattcttcacccttggtatattccaacatccaccaacaattataacatcattta |
47879417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 905 - 952
Target Start/End: Original strand, 44728125 - 44728172
Alignment:
| Q |
905 |
agcaacatcacaataaccagcacccatattgaaaatgagagcaatttt |
952 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
44728125 |
agcaacatcacaataacccgcgtccatattgaaaatcagagcaatttt |
44728172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 47845010 - 47845065
Alignment:
| Q |
285 |
ctcggaattacaggtacaaacttgttcccatcagctcggattccaatggcaagagg |
340 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||| |||||| ||||||||||||||||| |
|
|
| T |
47845010 |
ctcggaattacatgtacaaagttgcttccattagctcgaattccaatggcaagagg |
47845065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 42926344 - 42926378
Alignment:
| Q |
109 |
tgatttcaggaactccttttggtgctgcaggtatt |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42926344 |
tgatttctggaactccttttggtgctgcaggtatt |
42926378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 530 - 575
Target Start/End: Original strand, 21130945 - 21130990
Alignment:
| Q |
530 |
tatcacatcatttatatccccgacttctacctttgcatcatgtaaa |
575 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||||| |||||| |
|
|
| T |
21130945 |
tatcacatcatttatattctcaacttctacctttgcatcttgtaaa |
21130990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 530 - 575
Target Start/End: Complemental strand, 21251081 - 21251036
Alignment:
| Q |
530 |
tatcacatcatttatatccccgacttctacctttgcatcatgtaaa |
575 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||||| |||||| |
|
|
| T |
21251081 |
tatcacatcatttatattctcaacttctacctttgcatcttgtaaa |
21251036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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