View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341R-Insertion-6 (Length: 720)
Name: NF1341R-Insertion-6
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341R-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 677; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 9 - 717
Target Start/End: Original strand, 21242389 - 21243096
Alignment:
| Q |
9 |
gtcctcatcctctcccctaataacatcgaattccctgtatgtttcctagctgctgcctccatcggcgcaatagtcaccactgcaaatcctctttacaccg |
108 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242389 |
gtcctcatcctctcccccaataacatcgaattccctgtatgtttcctagctgctgcctccatcggcgcaatagtcaccactgcaaatcctctttacaccg |
21242488 |
T |
|
| Q |
109 |
ttgcagaactctccaaacaaatcaaggattccaatcctaaactagtcatcactgtccctgaattatggagcaaagtgaagagtttcaatttcaactttcc |
208 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242489 |
ttgcggaactctccaaacaaatcaaggattccaatcctaaactagtcatcactgtccctgaattatggagcaaagtgaagagtttcaatttcaactttcc |
21242588 |
T |
|
| Q |
209 |
agcaattatcatcaattcgggtaatattatatacaaagttagttagattggttagttatagtttgactagttagctgttctcatcattctctacataaca |
308 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242589 |
agcaattatcattaattcgggtaatattatatacaaagttagttagattggttagttatagtttgactagttagctgttctcatcattctctacataaca |
21242688 |
T |
|
| Q |
309 |
aactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaa |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242689 |
aactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaa |
21242788 |
T |
|
| Q |
409 |
aacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcag |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242789 |
aacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcag |
21242888 |
T |
|
| Q |
509 |
catcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttat |
608 |
Q |
| |
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| T |
21242889 |
cgtcgttgatgataaacatggatgatgatttagctggggaattaaacaatgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttat |
21242988 |
T |
|
| Q |
609 |
aacatacgcacagctaaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtatcaagtgacgaa |
708 |
Q |
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| T |
21242989 |
aacatacgcacagct-aaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaa |
21243087 |
T |
|
| Q |
709 |
cttgtgggt |
717 |
Q |
| |
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||||||||| |
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| T |
21243088 |
cttgtgggt |
21243096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 255 - 697
Target Start/End: Original strand, 21258411 - 21258841
Alignment:
| Q |
255 |
attggttagttatagtttgactagttagctgttctcatcattctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttc |
354 |
Q |
| |
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||||| |||| |||||| ||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||||| |||| | |||| |||||| |
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| T |
21258411 |
attggatagtgatagttacactagttagctgtactcatcattcgctatataacaaactttatatctgataggtaatgcaacaggttgaaattcgaacttc |
21258510 |
T |
|
| Q |
355 |
aagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcag |
454 |
Q |
| |
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| |||||||||||||||||| |||||||| ||||||||||||||| ||||||||| | | ||||||||||| || | |||| |||||||||||| |
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| T |
21258511 |
acgagttttgaggcgttgatagaatcagctggggaagtaacagaaataccagaaagcaacgtgaaacagactgaca-------acttctgtactcatcag |
21258603 |
T |
|
| Q |
455 |
gaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaa |
554 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||| |
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| T |
21258604 |
gaactacaggagtgagcaaaggtgtgatactcacccacaagaacttcatcgcgacttcattgatgataaacatggatgatgatttagcaggggaatta-- |
21258701 |
T |
|
| Q |
555 |
caacgtgttcatctgcgttttaccgatgtttcatgtgtttggattggcggttataacatacgcacagctaaaggagaggaagtaccgtggtttcgatggg |
654 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||| | |||||||| | ||| |
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| T |
21258702 |
-aatgtgttcctctgcgttttaccgatgtttcatgtgtttagattggcggttataacatacgcgcagct-aaggagaggaagtgcggtggtttcaacggg |
21258799 |
T |
|
| Q |
655 |
gaggtttgagttagagggttttttgaaggtgattgagaagtat |
697 |
Q |
| |
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||| |||||||||||||| ||||||||||||||||| |||||| |
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| T |
21258800 |
gagatttgagttagaggg-tttttgaaggtgattgaaaagtat |
21258841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 259 - 716
Target Start/End: Original strand, 21253893 - 21254357
Alignment:
| Q |
259 |
gttagttatagtttgactagttagctgttctcatcattctctacata--acaaactttatatctaataggtaat----gcaacgggttcatattcaaact |
352 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||| || || ||| |||||||||| |||||||||||||| | |||||||||| ||||||||| |
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| T |
21253893 |
gttagttataattaaactagttagctgttcttatcatactttatatataacaaactttacatctaataggtaattaatgtaacgggttcaaattcaaact |
21253992 |
T |
|
| Q |
353 |
tcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatc |
452 |
Q |
| |
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||| ||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||| |
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| T |
21253993 |
tcaccagttttgagtcgttgattgaaacagcatgagaagtaacagaattaccagaaaacgatgtgaaacaaagcgatacagcggctttgttgtactcatc |
21254092 |
T |
|
| Q |
453 |
aggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaatta |
552 |
Q |
| |
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|||||| |||||||||||||| || ||||| || || ||||||||| |||| || | |||| ||||| |||||||| ||||||||||| ||||||||| |
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| T |
21254093 |
aggaacaacaggagtgagcaagggcgtgatacttacccacaagaacgtcattgcggtggcgttaatgattaacatggacgatgatttagcaggggaatta |
21254192 |
T |
|
| Q |
553 |
aacaacgtgttcatctgcgttttaccgatgt---ttcatgtgtttggattggcggttataacatacgcacagctaaaggagaggaagtaccgtggtttcg |
649 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
21254193 |
aacaacgtgttcttctgcgttttaccgatgtttattcatgtgtttagattggtggttataacatacgcgcagct-aaggagaggaagtacggtggtttca |
21254291 |
T |
|
| Q |
650 |
atggggaggtttgagttagagggttttttgaaggtgattgagaagtatcaagtgacgaacttgtggg |
716 |
Q |
| |
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| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| ||||||| |
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| T |
21254292 |
acggggaggtttgagttagaggg-tttttgaaggtgattgagaagcatagagtgacgaatttgtggg |
21254357 |
T |
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