View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1341R-Insertion-7 (Length: 684)

Name: NF1341R-Insertion-7
Description: NF1341R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1341R-Insertion-7
NF1341R-Insertion-7
[»] chr4 (4 HSPs)
chr4 (9-684)||(43559978-43560669)
chr4 (544-667)||(1992574-1992697)
chr4 (75-113)||(21173782-21173820)
chr4 (72-125)||(24359816-24359869)
[»] chr1 (5 HSPs)
chr1 (72-199)||(51044468-51044595)
chr1 (381-489)||(51044664-51044772)
chr1 (74-138)||(16138908-16138972)
chr1 (72-158)||(37962865-37962951)
chr1 (74-138)||(16127398-16127462)
[»] chr3 (3 HSPs)
chr3 (72-199)||(34626631-34626758)
chr3 (381-489)||(34626408-34626516)
chr3 (74-166)||(44674038-44674130)
[»] chr7 (1 HSPs)
chr7 (78-158)||(45676052-45676132)
[»] chr5 (1 HSPs)
chr5 (62-125)||(2590833-2590896)
[»] chr2 (5 HSPs)
chr2 (72-136)||(27172787-27172851)
chr2 (389-449)||(41830788-41830848)
chr2 (69-136)||(28205955-28206022)
chr2 (64-127)||(42789005-42789068)
chr2 (64-145)||(37881847-37881928)
[»] chr8 (8 HSPs)
chr8 (75-156)||(5960363-5960444)
chr8 (64-125)||(41351226-41351287)
chr8 (75-130)||(5843121-5843176)
chr8 (223-252)||(32297706-32297735)
chr8 (75-127)||(5849866-5849918)
chr8 (75-127)||(5921235-5921287)
chr8 (75-127)||(5949127-5949179)
chr8 (75-127)||(5984655-5984707)
[»] chr6 (1 HSPs)
chr6 (394-428)||(34358271-34358305)


Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 9 - 684
Target Start/End: Complemental strand, 43560669 - 43559978
Alignment:
9 aaaatcatgttacattcttcaaaactaagagtctaacatggttgatgaatttcttcaggacttcaaagatgtggaaagagttgtagattgagatggataa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43560669 aaaatcatgttacattcttcaaaactaagagtctaacatggttgatgaatttcttcaggacttcaaagatgtggaaagagttgtagattgagatggataa 43560570  T
109 actatttgaggcctgatttaaagagaggaatgttctcacaacaagaagaggatcttataatcagtcttcatgaagtccttggaaataggta--------- 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
43560569 actatttgaggcctgatttaaagagaggaatgttctcacaacaagaagaggatcttataatcagtcttcatgaagtccttggaaataggtaacatcatat 43560470  T
200 -------tatgattcaacatatatcattttgtgcatgtttggaatcacgatgagtttgactaaattatcacagtcctgtaatatagctttaacaaaaatt 292  Q
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
43560469 acgaatatatgattcaacatatatcattttgtgcatgtttggaatcaccatgagtttgactaaattatcatagtcctgtaatatagctttaacaaaaatt 43560370  T
293 acaaggactccctgtgattttgtcaaattcactgtgaatccaaacatatttcttccgttacgaaatgaatttcnnnnnnngaacattacaggtgggctca 392  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||    
43560369 acgaggactccctgtgattttgtcaaattcactgtgaatccaaacatatttcttctgttacgaaatgaatttctttttttgaacattacaggtgggctca 43560270  T
393 aatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaagggattgatccaaca 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43560269 aatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaagggattgatccaaca 43560170  T
493 acacacaagcctcttacagaagcatatcttaaggaagagaacaaaatcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggtt 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43560169 acacacaagcctcttacagaagcatatcttaaggaagagaacaaaatcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggtt 43560070  T
593 cagcatttctaataaccgattcgagttactatgatgataatggcttaacagaagcttcaagagaaattttcaccagcaagcaagcattggac 684  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43560069 cagcatttctaataactgattcgagttactatgatgataatggcttaacagaagcttcaagagaaattttcaccagcaagcaagcattggac 43559978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 544 - 667
Target Start/End: Complemental strand, 1992697 - 1992574
Alignment:
544 gaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggcttaacag 643  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
1992697 gaaacaacagcaccacctatgcaaataccatcagttacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggtttaacag 1992598  T
644 aagcttcaagagaaattttcacca 667  Q
    ||||||||||||||||||||||||    
1992597 aagcttcaagagaaattttcacca 1992574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 21173782 - 21173820
Alignment:
75 agatgtggaaagagttgtagattgagatggataaactat 113  Q
    ||||||||||| |||||||||||||||||| ||||||||    
21173782 agatgtggaaaaagttgtagattgagatggctaaactat 21173820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 24359869 - 24359816
Alignment:
72 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgat 125  Q
    |||||||||||||| |||||||| || |||||||| || || ||||||||||||    
24359869 caaagatgtggaaaaagttgtaggttaagatggatcaattacttgaggcctgat 24359816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 6e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 51044468 - 51044595
Alignment:
72 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagaggatcttataatca 171  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||| ||||    
51044468 caaaggtgtggaaagagctgtagattgagatggataaactatttgaggcctgatttgaagagaggaatgttctcaaaacaagaggaagatcttatcatca 51044567  T
172 gtcttcatgaagtccttggaaataggta 199  Q
     |||||||||||  ||||||||||||||    
51044568 atcttcatgaagcacttggaaataggta 51044595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 381 - 489
Target Start/End: Original strand, 51044664 - 51044772
Alignment:
381 caggtgggctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaaggg 480  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||| ||||||||  |||| |||||||| ||  | || ||||||    
51044664 caggtgggctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaaggg 51044763  T
481 attgatcca 489  Q
    |||||||||    
51044764 attgatcca 51044772  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 16138972 - 16138908
Alignment:
74 aagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaa 138  Q
    ||||||||||||||||||||||||||||||||| |||||||| |  |||||| | ||||||||||    
16138972 aagatgtggaaagagttgtagattgagatggattaactatttaaaacctgatattaagagaggaa 16138908  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 37962865 - 37962951
Alignment:
72 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagag 158  Q
    ||||| ||||| |||||||| || || ||||||||||| || |||||||||||||| || ||||||   ||||||||||||||||||    
37962865 caaaggtgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaaagaggagcattctcacaacaagaagag 37962951  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 16127462 - 16127398
Alignment:
74 aagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaa 138  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||  ||||| | ||||||||||    
16127462 aagatgtggaaagagttgtagattgagatggattaattatttaagaactgatattaagagaggaa 16127398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 34626758 - 34626631
Alignment:
72 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagaggatcttataatca 171  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||| ||||||| || |||||||| ||||    
34626758 caaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaagagaggaatgttctcaaaacaagaggaagatcttattatca 34626659  T
172 gtcttcatgaagtccttggaaataggta 199  Q
     |||||||||||  ||||||||||||||    
34626658 atcttcatgaagcacttggaaataggta 34626631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 381 - 489
Target Start/End: Complemental strand, 34626516 - 34626408
Alignment:
381 caggtgggctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaaggg 480  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||  |||| |||||||| ||  | || ||||||    
34626516 caggtgggctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaaggg 34626417  T
481 attgatcca 489  Q
    |||||||||    
34626416 attgatcca 34626408  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 44674038 - 44674130
Alignment:
74 aagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagaggatcttat 166  Q
    ||||||||| |||||||| ||||||||||||||||| ||  | || |||||| | ||||||||||  ||| |  |||||||||| ||||||||    
44674038 aagatgtggcaagagttgcagattgagatggataaattacctaagacctgatctcaagagaggaaacttcactgaacaagaagatgatcttat 44674130  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 45676132 - 45676052
Alignment:
78 tgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaagag 158  Q
    ||||| |||||||||||||||||||||||||| ||| | ||||||||||| |||||||||   |||||| | |||||||||    
45676132 tgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaagagaggagcattctcagagcaagaagag 45676052  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 2590833 - 2590896
Alignment:
62 ttcaggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgat 125  Q
    |||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||    
2590833 ttcagggcttcaaaggtgtggtaagagttgtaggttgagatggataaattatttaaggcctgat 2590896  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 27172851 - 27172787
Alignment:
72 caaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagagg 136  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||||| || ||| |||| |||||    
27172851 caaagatgtggaaagagttgcagattaagatggacaaactatttgagaccagatctaaaaagagg 27172787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 389 - 449
Target Start/End: Complemental strand, 41830848 - 41830788
Alignment:
389 ctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattc 449  Q
    ||||||||||||||| |||||| || ||||| || |||||||| |||||||| ||||||||    
41830848 ctcaaatagcagcacgattaccgggaagaaccgacaatgaaataaaaaacttttggaattc 41830788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 28205955 - 28206022
Alignment:
69 cttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagagg 136  Q
    |||||| ||||||| || |||||| | ||||||||||| || ||| | ||||||||||||||||||||    
28205955 cttcaacgatgtgggaaaagttgtcgtttgagatggatcaattatcttaggcctgatttaaagagagg 28206022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 42789068 - 42789005
Alignment:
64 caggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 127  Q
    ||||||| || ||||||||||| ||||| || |||||||||||||| ||||| || ||||||||    
42789068 caggactgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgattt 42789005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 37881928 - 37881847
Alignment:
64 caggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctc 145  Q
    |||| |||||||| ||||| ||||||||| |  |  |||||| |||||||||||| |||||| | |||||||||| ||||||    
37881928 caggtcttcaaaggtgtggtaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggttctc 37881847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 5960444 - 5960363
Alignment:
75 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaagagaggaatgttctcacaacaagaag 156  Q
    ||||||||||||||||||||||| ||||||||||| ||| | || |||||||| ||  | ||||  ||||| ||||||||||    
5960444 agatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcaacaagaag 5960363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 41351287 - 41351226
Alignment:
64 caggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgat 125  Q
    |||| |||||||| ||||| ||||||||| |||| ||||||||||| |||||||| ||||||    
41351287 cagggcttcaaaggtgtggtaagagttgtcgattaagatggataaattatttgagacctgat 41351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 5843176 - 5843121
Alignment:
75 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgatttaaa 130  Q
    ||||||||||| ||||||||||| ||||||||||| ||| | || |||||||||||    
5843176 agatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaa 5843121  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 32297706 - 32297735
Alignment:
223 gtgcatgtttggaatcacgatgagtttgac 252  Q
    ||||||||||||||||||||||||||||||    
32297706 gtgcatgtttggaatcacgatgagtttgac 32297735  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 5849918 - 5849866
Alignment:
75 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 127  Q
    ||||||||||| ||||||||||| ||||||||||| ||| | || ||||||||    
5849918 agatgtggaaaaagttgtagattaagatggataaattatctaagacctgattt 5849866  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 5921287 - 5921235
Alignment:
75 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 127  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
5921287 agatgtggaaagagttgcagattaagatggataaattatctaagacctgattt 5921235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 5949179 - 5949127
Alignment:
75 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 127  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
5949179 agatgtggaaagagttgaagattaagatggataaattatctaagacctgattt 5949127  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 5984707 - 5984655
Alignment:
75 agatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 127  Q
    ||||||||||||||||| ||||| ||||||||||| ||| | || ||||||||    
5984707 agatgtggaaagagttgcagattaagatggataaattatctaagacctgattt 5984655  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 428
Target Start/End: Original strand, 34358271 - 34358305
Alignment:
394 atagcagcacaattaccagggagaacagataatga 428  Q
    |||||||||||||||||||| ||||||||||||||    
34358271 atagcagcacaattaccaggaagaacagataatga 34358305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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