View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_high_1 (Length: 650)
Name: NF1341_high_1
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 322 - 621
Target Start/End: Complemental strand, 41911510 - 41911211
Alignment:
| Q |
322 |
catatcctacgtaatgttcaaatatgtatatccctatattattaagccaagattaaacagtcgcttttggatttactatcatatttctccaacctatctt |
421 |
Q |
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| T |
41911510 |
catatcctacgtaatgttcaaatatgtatatccctatattattaagccaagattaaacagtcgcttttggatttactatcatatttctccaacctatctt |
41911411 |
T |
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| Q |
422 |
ttgaatattcaaaagaattcgataagatatatgaccttttttctttaaatcaattaatgtgcacttaattagattgatatgatggatttgttttataatg |
521 |
Q |
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| T |
41911410 |
ttgaatattgaaaagaattcgataagatatatgaccttttttctttaaatcaataaatgtgcacttaattagattgatatgatagatttgttttataatg |
41911311 |
T |
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| Q |
522 |
catgtcacctttggtctaatttaatgatggtcaaataattaaagtgaaagaagtgaatgagtttacgtctgatgtttatattagaaacgaataatatgca |
621 |
Q |
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| T |
41911310 |
tatgtcacctttggtctaatttaatcatggtcaaataattaaagtgaaagaagtgaatgagtttacgtctgatgtttttattagaaacgaataatatgca |
41911211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 41911783 - 41911571
Alignment:
| Q |
29 |
actgaaaacatgtcttgatttaacttaattaacttatttttctgggtaaggagtcattgtacatcacaatcatacatagttaaggatttgctgccataag |
128 |
Q |
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| T |
41911783 |
actgaaaacatgtcttgatttaactgaattaacttatttttctgggtaaggagtcattgtacatcacaatcatacatagttaaggatttgctgccataag |
41911684 |
T |
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| Q |
129 |
ataagaccaatatccatggctggaaccaacagtttgtaatatgcataacagccaagtgccaaagacttctgcacagaaacctcttgaaagatgcgattca |
228 |
Q |
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| T |
41911683 |
at-------------------ggaac-aacagtttgtaat--gcataacagccaagtgccaaagacttctgcacagaaacctcttgaaagatgcgattca |
41911606 |
T |
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| Q |
229 |
ttttgtgtctccgtgaaatcaattaattcaagatg |
263 |
Q |
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| T |
41911605 |
ttttgtgtctccgtgaaatcaattaattcaagatg |
41911571 |
T |
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