View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1341_high_11 (Length: 255)

Name: NF1341_high_11
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1341_high_11
NF1341_high_11
[»] chr4 (1 HSPs)
chr4 (1-226)||(21262187-21262412)
[»] chr8 (4 HSPs)
chr8 (36-226)||(22533024-22533214)
chr8 (36-226)||(22529813-22530003)
chr8 (36-226)||(25992422-25992612)
chr8 (77-126)||(21267383-21267432)
[»] scaffold0097 (1 HSPs)
scaffold0097 (36-226)||(19950-20140)
[»] chr3 (3 HSPs)
chr3 (36-226)||(20984653-20984843)
chr3 (36-226)||(49366890-49367080)
chr3 (86-126)||(8407250-8407290)
[»] chr2 (2 HSPs)
chr2 (36-226)||(20716112-20716302)
chr2 (86-126)||(32038268-32038308)
[»] chr5 (3 HSPs)
chr5 (51-226)||(13190242-13190417)
chr5 (86-126)||(37504046-37504086)
chr5 (85-126)||(26248093-26248134)
[»] chr6 (1 HSPs)
chr6 (36-226)||(33092563-33092753)
[»] chr7 (1 HSPs)
chr7 (86-126)||(37569027-37569067)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21262412 - 21262187
Alignment:
Q  1 aaggtaaacagatatcgtgtcttacacaaatattaataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgatt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21262412 aaggtaaacagaaatcgtgtcttacacaaatattaataagttatgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgatt 21262313  T
Q  101 gtacacatgtgcgtgttaaagtaccagcagatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttga 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  21262312 gtacacatgtgcgtgttaaagtaccagcacatcttgcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggctgcatgcacatttga 21262213  T
Q  201 cttgaaatttacttatgtcttggttg 226  Q
    ||||||||||||||||||||||||||    
T  21262212 cttgaaatttacttatgtcttggttg 21262187  T

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Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 22533214 - 22533024
Alignment:
Q  36 ataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcagatctt 135  Q
    ||||||| |||| | ||||||||||  | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| |||| |||    
T  22533214 ataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaacagaactt 22533115  T
Q  136 gcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttg 226  Q
    ||||||||||| |||||||||||||||||||||||||||||||| || | ||  ||||||||||||||||||||||| |||||||||||||    
T  22533114 gcacctagataccgtggtagaaaagattaccctacacaaaatgtattcgctgcgtgcacatttgacttgaaatttacatatgtcttggttg 22533024  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 22530003 - 22529813
Alignment:
Q  36 ataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcagatctt 135  Q
    ||||||| |||| | ||||||||||  | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| |||| |||    
T  22530003 ataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaacagaactt 22529904  T
Q  136 gcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttg 226  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | | ||  ||||||||||||||||||||||| |||||||||||||    
T  22529903 gcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttg 22529813  T

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Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 25992612 - 25992422
Alignment:
Q  36 ataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcagatctt 135  Q
    ||||||| |||| | ||||||||||  | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| |||| |||    
T  25992612 ataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaacagaactt 25992513  T
Q  136 gcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttg 226  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | | ||  ||||||||||||||||||||||| |||||||||||||    
T  25992512 gcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttg 25992422  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 21267432 - 21267383
Alignment:
Q  77 aggactgtattggagcaattgattgtacacatgtgcgtgttaaagtacca 126  Q
    |||||||  ||||||||||||||||||||||||| ||||| |||||||||    
T  21267432 aggactgcgttggagcaattgattgtacacatgttcgtgtaaaagtacca 21267383  T

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Target: scaffold0097 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 20140 - 19950
Alignment:
Q  36 ataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcagatctt 135  Q
    ||||||| |||| | ||||||||||  | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| |||| |||    
T  20140 ataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaacagaactt 20041  T
Q  136 gcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttg 226  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | | ||  ||||||||||||||||||||||| |||||||||||||    
T  20040 gcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttg 19950  T

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Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 20984653 - 20984843
Alignment:
Q  36 ataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcagatctt 135  Q
    ||||||| |||| | ||||||||||  | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| |||| |||    
T  20984653 ataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaacagaactt 20984752  T
Q  136 gcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttg 226  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | | ||  ||||||||||||||||||||||| |||||||||||||    
T  20984753 gcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttg 20984843  T

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Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 49367080 - 49366890
Alignment:
Q  36 ataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcagatctt 135  Q
    ||||||| |||| | ||||||||||  | |||||||||| ||||| ||||| |||||||||||  |||||||| | ||||| ||||| ||| |||| |||    
T  49367080 ataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgaccgtacacatatacgtgtcaaagttccaacagaactt 49366981  T
Q  136 gcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttg 226  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | | ||  ||||||||||||||||||||||| |||||||||||||    
T  49366980 gcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttg 49366890  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 8407250 - 8407290
Alignment:
Q  86 ttggagcaattgattgtacacatgtgcgtgttaaagtacca 126  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  8407250 ttggagcaattgattgtacacatgttcgtgtaaaagtacca 8407290  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 20716302 - 20716112
Alignment:
Q  36 ataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcagatctt 135  Q
    ||||||| |||| | ||||||||||  | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| |||| |||    
T  20716302 ataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaacagaactt 20716203  T
Q  136 gcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttg 226  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | | ||  ||||||||||||||||||||||| |||||||||||||    
T  20716202 gcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttg 20716112  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 32038268 - 32038308
Alignment:
Q  86 ttggagcaattgattgtacacatgtgcgtgttaaagtacca 126  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  32038268 ttggagcaattgattgtacacatgttcgtgtaaaagtacca 32038308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 51 - 226
Target Start/End: Complemental strand, 13190417 - 13190242
Alignment:
Q  51 cacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcagatcttgcacctagatatcgt 150  Q
    ||||||||||  | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| |||| |||||||||||||| |||    
T  13190417 cacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaacagaacttgcacctagataccgt 13190318  T
Q  151 ggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttg 226  Q
    |||||||||||||||||||||||||||||  | | ||  ||||||||||||||||||||||| |||||||||||||    
T  13190317 ggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttgacttgaaatttacatatgtcttggttg 13190242  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 37504086 - 37504046
Alignment:
Q  86 ttggagcaattgattgtacacatgtgcgtgttaaagtacca 126  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  37504086 ttggagcaattgattgtacacatgttcgtgtaaaagtacca 37504046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 26248093 - 26248134
Alignment:
Q  85 attggagcaattgattgtacacatgtgcgtgttaaagtacca 126  Q
    |||||||||||||||||||||||||| ||| | |||||||||    
T  26248093 attggagcaattgattgtacacatgttcgtataaaagtacca 26248134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 33092563 - 33092753
Alignment:
Q  36 ataagttgtgttctgcacttttaatatgttaattgaatgtcaggactgtattggagcaattgattgtacacatgtgcgtgttaaagtaccagcagatctt 135  Q
    ||||||| |||| | ||||||||||  | |||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||| ||||| ||| |||| |||    
T  33092563 ataagttatgttatacacttttaatgggataattgaatgccaggattgtatcggagcaattgactgtacacatatacgtgtcaaagttccaacagaactt 33092662  T
Q  136 gcacctagatatcgtggtagaaaagattaccctacacaaaatgtcttggttgaatgcacatttgacttgaaatttacttatgtcttggttg 226  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | | ||  |||||||||| |||||||||||| |||||||||||||    
T  33092663 gcacctagataccgtggtagaaaagattaccctacacaaaatgtactcgctgcgtgcacatttggcttgaaatttacatatgtcttggttg 33092753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 37569027 - 37569067
Alignment:
Q  86 ttggagcaattgattgtacacatgtgcgtgttaaagtacca 126  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  37569027 ttggagcaattgattgtacacatgttcgtgtaaaagtacca 37569067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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