View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_high_12 (Length: 254)
Name: NF1341_high_12
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 254
Target Start/End: Original strand, 3730862 - 3731086
Alignment:
| Q |
30 |
gcaattaccacccaaaaatgttggcaagttactgaaaaattgaacaattagatctaagagtttcattaaacgcagaacatcacaaatagacctaattgta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3730862 |
gcaattaccacccaaaaatgttggcaagttactgaaaaattgaacaattagatctaagagtttcattaaacgcagaacatcacaaatagacctaattgta |
3730961 |
T |
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| Q |
130 |
agtagtaacatattcatcnnnnnnnggcttcaacttcctaagttgcctgttgctacagaaaaaatcatggcttaactatacaaaagtcgttttacctcgg |
229 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3730962 |
agtagtaacatattcatcaaaaaaaggcttcaacttcctaagttgcctgttgctacagaaaaaatcatggcttaactatacaaaagtcgttttacctcgg |
3731061 |
T |
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| Q |
230 |
atcaatagcgtctagcaacacactg |
254 |
Q |
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||||||||| ||||||||||||||| |
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| T |
3731062 |
atcaatagcctctagcaacacactg |
3731086 |
T |
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