View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_high_14 (Length: 252)
Name: NF1341_high_14
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 3731381 - 3731621
Alignment:
| Q |
1 |
ttaactttttatgttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacattaaaatagcagtca |
100 |
Q |
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| T |
3731381 |
ttaactttttatgttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacattaa--tagcattca |
3731478 |
T |
|
| Q |
101 |
tgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731479 |
tgtcacatatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgta |
3731578 |
T |
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| Q |
201 |
ccttgcaggctttgagaaattagacattccctagaagaataat |
243 |
Q |
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| T |
3731579 |
ccttgcaggctttgagaaattagacattccctagaagaataat |
3731621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 11683800 - 11683935
Alignment:
| Q |
108 |
tatatccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataactgctatcaatcttctgaatttccatgaagatgtaccttgca |
207 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11683800 |
tataaccaaatcatctgctcatgagctatgatcaacaaaaagtacctcaggataataattgctatcaatcttctgaatttccatgaagatttaccttgca |
11683899 |
T |
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| Q |
208 |
ggctttgagaaattagacattccctagaagaataat |
243 |
Q |
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| T |
11683900 |
ggctctgagaaattagacattccctagaagaataat |
11683935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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