View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_high_5 (Length: 371)
Name: NF1341_high_5
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 10238007 - 10237659
Alignment:
| Q |
1 |
ctgaccaagttccgatttcaaactaccttnnnnnnntggggtggtatagcaatataatttattgttattcaatgtcattgtaaaatttccatatttcctt |
100 |
Q |
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| T |
10238007 |
ctgaccaagttccgatttcaaactaccttataaaaatggggtggtatagcaatataatttattgttattcaatgtcattgtaaaatttccatatttcctt |
10237908 |
T |
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| Q |
101 |
ttaattattgtttatccattcctttaccgtgtcttttgatattttgttttctttgctagacttgagttaccagattaatccatctgctggagttgcttat |
200 |
Q |
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| T |
10237907 |
ttaattattgtttatccgttcctttaccgtttcttttgatattttgttttctttgctagacctgagttaccagattaatccatctgctggagttgcttat |
10237808 |
T |
|
| Q |
201 |
gtgaaaggtaaagccgatccgataaaaattttattactgctaaagaagggaggacaacatgctacacttgaatggattagtcatggtattccaagagagg |
300 |
Q |
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| T |
10237807 |
gtgaaaggtaaagccgatccgataaaaattttattactgctaaagaagggaggacaacatgctacactcgaatggattagtcatggtattccaagagagg |
10237708 |
T |
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| Q |
301 |
aaaaagccaaatatcaaggaaatggcaattacaataatcatatgatgat |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10237707 |
aaaaagccaaatatcaaggaaatggcaattacaataatcatatgatgat |
10237659 |
T |
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