View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_high_6 (Length: 356)
Name: NF1341_high_6
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 30 - 345
Target Start/End: Complemental strand, 33461841 - 33461526
Alignment:
| Q |
30 |
ccttatgccaagaacatgctgaacttaaagcaagagggtttaacccttccaaaggttggattgggccacctcatgctcctcctcgtatgcctcccaccat |
129 |
Q |
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| T |
33461841 |
ccttatgccaagaacatgctgaacttaaagcaagagggtttaacccttccaaaggttggattgggccacctcatgctcctcctcgtatgcctcccaccat |
33461742 |
T |
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| Q |
130 |
gtttcgatgatccatctgcaattataatacatgcatcaatttagagttaatcaatttctgtcttagtcatgttacatctataatttgcagcagtactatt |
229 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
33461741 |
gtttcgatgatccatctgcaactataatacatgcatcaatttagagttaatcaacttctgtcatagtcatgttatatctataatttgcagcagtactatt |
33461642 |
T |
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| Q |
230 |
aattaacagtgcctttttctatgcttattactacttagtatgaccgtgataatgtatttattacagtatactgtcatttagaaattcaactgtgatgagt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33461641 |
aattaacagtgcctttttctatgcttattactacttagtatgaccgtgataatgtatttattacagtatactgtcatttagaaattcaactgtgatgagt |
33461542 |
T |
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| Q |
330 |
aatcttattggttcat |
345 |
Q |
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|||||||||||||||| |
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| T |
33461541 |
aatcttattggttcat |
33461526 |
T |
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