View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_high_9 (Length: 277)
Name: NF1341_high_9
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 207
Target Start/End: Original strand, 2383879 - 2383995
Alignment:
| Q |
96 |
gtaatggtttcatttgaaa-----gcttataaatgaaatgtttataagtctgtaaagaaattcaaacaatgaagcattgaaacaaattttgcaacatgat |
190 |
Q |
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| T |
2383879 |
gtaatggtttcatttgaaattaaagcttataaataaaatgtttataagtcttcaaagaaattcaaacaatgaagcattgaaacaaattttacaacatgat |
2383978 |
T |
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| Q |
191 |
tttaacaatatatatat |
207 |
Q |
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| T |
2383979 |
tttaacacaatatatat |
2383995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 2384034 - 2384076
Alignment:
| Q |
198 |
atatatatatgaactaattgattacttcttcgacttatttcat |
240 |
Q |
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| T |
2384034 |
atatatatatgaactaattgattacttcttcgacttatttcat |
2384076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 2381124 - 2381180
Alignment:
| Q |
96 |
gtaatggtttcatttgaaagcttataaatgaaatgtttataagtctgtaaagaaatt |
152 |
Q |
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| T |
2381124 |
gtaatagtttcatttgaaagcttataaataaaaaatttataaatcttcaaagaaatt |
2381180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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