View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_low_2 (Length: 650)
Name: NF1341_low_2
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 10 - 621
Target Start/End: Original strand, 9973632 - 9974247
Alignment:
| Q |
10 |
gaataatatgtttgtggaaaaattgtgcctttcattgaggatacaatgaacaaggttgcatggagttcaagcaccgaaagtgtgccattttgaaagaaga |
109 |
Q |
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|||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9973632 |
gaatcatatgtttgtggaaaaattgtgccttacaatgaggatacaatgaacaaggttgcatggagttcaagcaccgaaagtgtgccatgttgaaagaaga |
9973731 |
T |
|
| Q |
110 |
agggcagaattggaggcaacagggaag---gacccttgaaggaaatcaaggacgcattgtgtgtttccgaagcgggtttaat-aagcacgtcgaagaatg |
205 |
Q |
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| T |
9973732 |
aggacatatttggaggcaacagggaagaaggacccttgaaggaaatcaaggacgcattgtgtgtttccgaagcgggtttaatgaagcatgtcgaagggtg |
9973831 |
T |
|
| Q |
206 |
gttgcttagaaaattttctcaaaaagatacgaagccactagaaaaagcttggggaacatattttgtttctaatttcgaaaattatggaaatgccttgtaa |
305 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9973832 |
gttgcttagaaaattttctcaaaaagatacgaagctactacaaaaagcttggggaacatattttgtttctaattttgaaaattatggaaatgccttgtaa |
9973931 |
T |
|
| Q |
306 |
ttcaaattggttaccgcggtatctgtgcaagcaattcttgaaaaataagacatcaatgtgtggaggatagatgctaatgatttgaagagactagccaatg |
405 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9973932 |
ttcaaattggttaccgcgatatctgtgcaagcaattcttgaaaaataagacatcaatgtgtggaggatagatgctaatgttttgaagagactagccaatg |
9974031 |
T |
|
| Q |
406 |
aaaatcgagctggatttcggttaggacattgtagcctcatcaatgnnnnnnncaaggtttcgagtgtttcaaccaaacccaccaatttgccacaacggat |
505 |
Q |
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| T |
9974032 |
aaaatcgagctggatttcggttaggacattgtagcctcatcaatgtttttttcaaggtttcgagtgtttcaaccaaacccaccaatttgccacaacggaa |
9974131 |
T |
|
| Q |
506 |
agtaaacaacattgacaaagggtggtttaagaaactccaagagcctctagtccgaattccaagacacgtacctcaagaaataattccatttccacatcaa |
605 |
Q |
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| T |
9974132 |
agtaaacaacattgacaaagggtggtttaagaaaatccaagagcctctagtccgaattccaagacacgtacctcaagaaataattccatttccacatcaa |
9974231 |
T |
|
| Q |
606 |
gctcaagaggaagaag |
621 |
Q |
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| T |
9974232 |
gctcaagaggaagaag |
9974247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 70 - 620
Target Start/End: Original strand, 39069694 - 39070249
Alignment:
| Q |
70 |
tggagttcaagcaccgaaagtgtgccattttgaaagaagaagggcagaattggaggcaac-agggaag---gacccttgaaggaaatcaaggacgcattg |
165 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||| |||||||| | || ||||||| ||| ||||||||||||||||| || ||| |
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| T |
39069694 |
tggagttcaagcaccgaaaatgtgccatgttgaaagaagaagggtggaattggaagagactagggaagagggacttttgaaggaaatcaaggatgcgttg |
39069793 |
T |
|
| Q |
166 |
tgtgtttccgaagcgggtttaat-aagcacgtcgaagaatggttgcttagaaaattttctcaaaaagatacgaagccactagaaaaagcttggggaacat |
264 |
Q |
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| T |
39069794 |
tgtgtacccgaagcgagttggttgaagcatgtggaaggatgttttcctagaaaattttctcaaaaggatatgaggcgactagcaaaagcttggggaacat |
39069893 |
T |
|
| Q |
265 |
attttgtttctaatttcgaaaattatggaaatgccttgtaattcaaattggttaccgcggtatctgtgcaagcaattcttgaaaaataagacatcaatgt |
364 |
Q |
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| T |
39069894 |
agtttgtttctaatttagaaagttgtgggaatgcttcaaaattcaaattggtcaccacgattggtgtacaaacaattattgaaagagaagacataagcgt |
39069993 |
T |
|
| Q |
365 |
gtggaggatagatgctaatgatttgaagagactagccaatgaaaatcgagctggatttcggttaggacattgtagcctcatcaatgnnnnnnncaaggtt |
464 |
Q |
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| T |
39069994 |
ggggaggataattgcaaatgacttgaaaaggctacccgatgaaaatcgagcctgattttggttgagacattgtagcctcataaatgctttatgcaaggct |
39070093 |
T |
|
| Q |
465 |
tcgagtgtttcaaccaaacccaccaatttgccacaacggatagtaaacaacattgacaaagggtggtttaagaaactccaagagcctctagtccgaattc |
564 |
Q |
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| T |
39070094 |
acacacgttccgattaaaccaaccatttcaccacaaagaaaggctaacaacatcgacaaaatgtggtttaagaaactccaggagcctatagtccaagttc |
39070193 |
T |
|
| Q |
565 |
caagacacgtacctcaagaaataattccatttccacatcaagctcaagaggaagaa |
620 |
Q |
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| T |
39070194 |
taagacaagtacctcaagagagaattccatctccacatcaagctcaagaagaagaa |
39070249 |
T |
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