View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_low_20 (Length: 253)
Name: NF1341_low_20
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35235394 - 35235174
Alignment:
| Q |
1 |
tcctttaacaaccttagtaaccctcctaacttgaacaactctttcttccaacccatctcttatcttttccttctttacacccgaaccgaatgatgtatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35235394 |
tcctttaacaaccttagtaaccctcctaacttgaataactctttcttccaacccatctcttatcttttccttctttacacccgaaccgaatccggtatct |
35235295 |
T |
|
| Q |
101 |
ttcctcgccttcttatccatcacatttatatcatttccaagcacactaacaccactgtacgcaacaccgtatagctcttcatatgcggcggcgatttcat |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35235294 |
ttcctcgccttcttatccatcacatttatatcatttccaagcacactaacaccactgtacgcaacaccgtatagctcttcatatgcggcggcgatttcat |
35235195 |
T |
|
| Q |
201 |
cttcgtcttcgtctgggccgt |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
35235194 |
cttcgtcttcgtctgggccgt |
35235174 |
T |
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