View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_low_22 (Length: 251)
Name: NF1341_low_22
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 24616209 - 24616459
Alignment:
| Q |
1 |
caggctaaaaatccgctcctctgccatggtatccaaaaataagtgcaagctgttcttcaaactgtcattacaaagaggattcacaacattgcaactttga |
100 |
Q |
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| T |
24616209 |
caggctaaaaatccgcccctctgccatggtatccaaaaataagtgcaagctgttctccaaactgtcattacaaagaggattcacaacattgcaactttga |
24616308 |
T |
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| Q |
101 |
tggtagtagcttgttgttggaggatccactttagtggcttttccgttccatcgcctac--------tagcaggttatca-nnnnnnnncataattaaatt |
191 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
24616309 |
tggcagtagcttgttgttggaggatccactttagtggcttttccgttccatcgcctacaactacgatagcaggttatcatttttttttcataattaaatt |
24616408 |
T |
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| Q |
192 |
agcaatctctttgtttatttattctgacattcacttcattaatatattctt |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24616409 |
agcaatctctttgtttatttattctgacattcacttcattaatattttctt |
24616459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 24107893 - 24107655
Alignment:
| Q |
1 |
caggctaaaaatccgctcctctgccatggtatccaaaaa-taagtgcaagctgttcttcaaactgtcattacaaagaggattcacaacattgcaactttg |
99 |
Q |
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||||| ||||||||| ||||||||||| ||||||||| |||||||||||||| || |||||||||||||||||||||| |||| ||||||||||| | |
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| T |
24107893 |
caggccaaaaatccgaccctctgccatgtcatccaaaaaataagtgcaagctgtcct--aaactgtcattacaaagaggatgcacagcattgcaacttcg |
24107796 |
T |
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| Q |
100 |
atggtagtagcttgttgttg-gaggatccactttagtggcttttccgttccatcgcctac--------tagcaggttatca-nnnnnnnncataattaaa |
189 |
Q |
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| T |
24107795 |
atagcagtagcttgttcttgagagggtccactttacccgcgtttcc-ttccatcacctacaactttgatagcaggttatcattattttttcatacttaaa |
24107697 |
T |
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| Q |
190 |
ttagcaatctctttgtttatttattctgacattcacttcatt |
231 |
Q |
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| T |
24107696 |
ttaacaatctctttgtttatttgttctgacatttacttcatt |
24107655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24114550 - 24114471
Alignment:
| Q |
1 |
caggctaaaaatccgctcctctgccatggtatccaaaaataagtgcaagctgttcttcaaactgtcattacaaagaggat |
80 |
Q |
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||||| |||||||||| |||||||||||||||| |||||| | ||||| ||| || ||||||||||||||||||||||| |
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| T |
24114550 |
caggccaaaaatccgcccctctgccatggtatcagaaaatatgcgcaagatgtcctccaaactgtcattacaaagaggat |
24114471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 24114407 - 24114366
Alignment:
| Q |
181 |
ataattaaattagcaatctctttgtttatttattctgacatt |
222 |
Q |
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| T |
24114407 |
ataattaaattaacaatctctttgtttatttattcttacatt |
24114366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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