View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_low_27 (Length: 224)
Name: NF1341_low_27
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_low_27 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 34026539 - 34026402
Alignment:
| Q |
88 |
aatatcatctacggtttctctatgcgtctcactaccaccatgccacatttcaaatgcagcatccatgttttgagaatagcacttgtacccacgttaaaaa |
187 |
Q |
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| T |
34026539 |
aatatcatctacggtttctctgtgcgtctcactaccaccatgccacatttcaaatgcagcatccatgttttgagaatagcacttgtacccacgttaaaaa |
34026440 |
T |
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| Q |
188 |
cttgagaactttgag-aaaagaacatcccttacaaaaa |
224 |
Q |
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| T |
34026439 |
cttgagaactttgagaaaaagaacatcccttacaaaaa |
34026402 |
T |
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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 35015172 - 35015254
Alignment:
| Q |
142 |
tgcagcatccatgttttgagaatagcacttgtacccacgttaaaaacttgagaacttt--gagaaaagaacatcccttacaaa |
222 |
Q |
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| T |
35015172 |
tgcagcatccatgttttgagaatatcacttgtaacaacgttataaatttgagaacttttaaagaaaagaacaacccttacaaa |
35015254 |
T |
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Target: scaffold0340 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 9591 - 9673
Alignment:
| Q |
142 |
tgcagcatccatgttttgagaatagcacttgtacccacgttaaaaacttgagaacttt--gagaaaagaacatcccttacaaa |
222 |
Q |
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| T |
9591 |
tgcagcatccatattttgagaatagcacttgtaacaacgttataaatttgagaacttttagagaaaagaacaacccttacaaa |
9673 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 26811980 - 26811898
Alignment:
| Q |
142 |
tgcagcatccatgttttgagaatagcacttgtacccacgttaaaaacttgagaacttt--gagaaaagaacatcccttacaaa |
222 |
Q |
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| T |
26811980 |
tgcagcatccattttttgagaatatcacttgtaacaacgttataaatttgagaacttttatagaaaagaacaacccttacaaa |
26811898 |
T |
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