View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_low_3 (Length: 563)
Name: NF1341_low_3
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 47 - 528
Target Start/End: Original strand, 28154547 - 28155012
Alignment:
| Q |
47 |
gtaggacccttgttttgtgctttgtctataactctatggtcagctcaaaacagctacaaaaaacatgtcctattcataccacatctattttgttttcaaa |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28154547 |
gtaggacccttgttttgtgctttgtctataactctatggtcagcccaagacagctacaaaaaacatgtcctcttcataccacatctattttgttttcaaa |
28154646 |
T |
|
| Q |
147 |
gtttctaatctaaatatgttaattaatttcagaccaaacaaaatcaacaatgtctgcagataccctactacataataattgatgnnnnnnnngagttgct |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |
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| T |
28154647 |
gtttctaatctaaatatgttaattaatttcagaccaaacaaaatcaacaatatctgcagataccctactacataataattgatg-aaaaaaagtgttgct |
28154745 |
T |
|
| Q |
247 |
catttttactaaatgaaaaaatggcaaaagaaattcaaatgacagctagcaagagtcaatggtgactgatacacgagctcaactacatggttaattaatt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28154746 |
catttttactaaatgaaaaaatggcaaaagaaattcaaatgacagctagcaagagtcaatggtgactgatacacgagctcaactacatggttaattaatt |
28154845 |
T |
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| Q |
347 |
gaaacacgtggcaggtgttgttcttgtagcagtagtactagtagtagtannnnnnnncctcaccacaactttaannnnnnngtgaaatgccatttatatc |
446 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
28154846 |
gaaacacgtggcaggtgttgttctt---------------gtagtagtattttttttcctcaccacaactttaatttttttgtgaaatgccatttatatc |
28154930 |
T |
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| Q |
447 |
actcttctcttttgcctttaattcgatcacctacatcctgaggtaaaaagggggacctaagtaaggaagaagggggcatatg |
528 |
Q |
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| T |
28154931 |
actcttctcttttgcctttaattcgatcacctacatcctgaggtaaaaagggggacctaagtaaggaagaagggggcatatg |
28155012 |
T |
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Back To:
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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 31581832 - 31581864
Alignment:
| Q |
5 |
aaaatatccattggatttgaatgcaacagctag |
37 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31581832 |
aaaatatccattggatttgaatgcaacagctag |
31581864 |
T |
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