View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_low_4 (Length: 448)
Name: NF1341_low_4
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 420
Target Start/End: Complemental strand, 34790028 - 34789616
Alignment:
| Q |
11 |
cataggcaataaatgctacgatttggcttttgtacaataaagaaataaattttatgtgtaccttccacaacaactcaggcatgtccagtgctggttgggc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34790028 |
cataggcaataaatgctacgatttggcttttgtacaataaagaaataaattttatgtgtaccttccacaacaactcaggcatgtccagtgctggttgggc |
34789929 |
T |
|
| Q |
111 |
aattgcaagctcaaatattgctctagctcgttcggtctcagctaaagatctctctagttctgcatacttgcaccatgcatagcaattttcaggtgtccac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34789928 |
aattgcaagctcaaatattgctctagctcgttcggtctcagctaaagatctctctagttctgcatacttgcaccatgcatagcaattttcaggtgtccac |
34789829 |
T |
|
| Q |
211 |
tccaaatatttttcatatagttttctgcatcgatctatattaccaagctgcagttctatctctatatacttcttaaatatctgttgacaaagataaaagg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34789828 |
tccaaatatttttcatatagttttctgcatcgatctatattaccaagctgcagttctatctctatatacttcttaaatatctgttgacaaagataaaagg |
34789729 |
T |
|
| Q |
311 |
tgtctgtgaagttaaccatgcagcaatgaaagtaagcaatat---aatatttcatctagatagatattagtaatgttaccttatcttttggagcctttcc |
407 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34789728 |
tgtctgtgaagttaaacatgcagcaatgaaagtaagcaatataataatatttcatctagatagatattagtaatgttaccttatcttttggagcctttcc |
34789629 |
T |
|
| Q |
408 |
aatagcatttcct |
420 |
Q |
| |
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||||||||||||| |
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| T |
34789628 |
aatagcatttcct |
34789616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 46 - 416
Target Start/End: Original strand, 2288943 - 2289313
Alignment:
| Q |
46 |
aataaagaaataaattttatgtgtaccttccacaacaactcaggcatgtccagtgctggttgggcaattgcaagctcaaatattgctctagctcgttcgg |
145 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2288943 |
aataaataaataaattttatgtgtaccttccacaacaactcaggcatgtccaatgctggttgggcaattgcaagctcaaatattgctctagctcgttcag |
2289042 |
T |
|
| Q |
146 |
tctcagctaaagatctctctagttctgcatacttgcaccatgcatagcaattttcaggtgtccactccaaatatttttcatatagttttctgcatcgatc |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |
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| T |
2289043 |
tctcagctaaagatctctctagttctgcatacttgctccatgcatagcaattttcaggtgaccactccaaatacttttcatatagttttctgcatctatc |
2289142 |
T |
|
| Q |
246 |
tatattaccaagctgcagttctatctctatatacttcttaaatatctgttgacaaagataaaaggtgtctgtgaagttaaccatgcagcaatgaaagtaa |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||| ||| |
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| T |
2289143 |
tatattaccaagctgcagttctatctctatatacttcttaaatatctgttgacaaagataaaaggcatatgtgaagttaactaggcagcaatgaaaataa |
2289242 |
T |
|
| Q |
346 |
gcaatataata-tttcatctagatagatattagtaatgttaccttatcttttggagcctttccaatagcatt |
416 |
Q |
| |
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||| ||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
2289243 |
gcagtataatactttcatctagatagatattagt-atgttaccttatctttaggagcctttccaatagcatt |
2289313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 49275991 - 49276174
Alignment:
| Q |
109 |
gcaattgcaagctcaaatattgctctagctcgttcggtctcagctaaagatctctctag---ttctgcatacttgcaccatgcatagcaattttcaggtg |
205 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||| | |||||||||||| | |||||||||||||| |||||| | ||| || |||| || |
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| T |
49275991 |
gcaattgcagactcaaatattgctctagctcgttcagtctctgataaagatctctccaaatcttctgcatacttgctccatgctttgcatttgtcagctg |
49276090 |
T |
|
| Q |
206 |
tccactccaaatatttttcatatagttttctgcatcgatctatattaccaagctgcagttctatctctatatacttcttaaata |
289 |
Q |
| |
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|||||||| ||| ||| |||| | ||| |||||||||||| |||||||||||| || ||| || ||||||||||||||||||| |
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| T |
49276091 |
accactccagataatttacatacaatttcctgcatcgatctgtattaccaagctccaattccatttctatatacttcttaaata |
49276174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 49279548 - 49279731
Alignment:
| Q |
109 |
gcaattgcaagctcaaatattgctctagctcgttcggtctcagctaaagatctctctag---ttctgcatacttgcaccatgcatagcaattttcaggtg |
205 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||||| | |||||||||| | |||||||||||||| |||||||| ||| |||| || || |
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| T |
49279548 |
gcaattgcagactcaaatattgctctagctcgttcagtctcagatgaagatctctccaactcttctgcatacttgctccatgcattgcattttttagctg |
49279647 |
T |
|
| Q |
206 |
tccactccaaatatttttcatatagttttctgcatcgatctatattaccaagctgcagttctatctctatatacttcttaaata |
289 |
Q |
| |
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|||||||| ||| ||| |||| | || |||||||||||| |||||||||||| || ||| || || |||||||||||||||| |
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| T |
49279648 |
accactccagatactttacatacaaattcctgcatcgatctgtattaccaagctccaattccatttcaatatacttcttaaata |
49279731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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