View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1341_low_8 (Length: 374)
Name: NF1341_low_8
Description: NF1341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1341_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 28 - 366
Target Start/End: Original strand, 43061793 - 43062131
Alignment:
| Q |
28 |
cacacttcatgatggtataacatgtttaacaatgaatgaataaacaaataacaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaa |
127 |
Q |
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| T |
43061793 |
cacactacatgatggtataacatgtttaacaatgaatgaataaacaaataaaaaatttcatcgcaaatcattagaattacagaaaagaaatatttggtaa |
43061892 |
T |
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| Q |
128 |
ctaaaataaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttgtcgggcaaaacccgggtgaaggtaaaggttgcattat |
227 |
Q |
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| T |
43061893 |
ctaaaataaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttttcgggcaaaacccgggtgaaggtaaaggttgcattat |
43061992 |
T |
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| Q |
228 |
tgtttaatttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagctt |
327 |
Q |
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| T |
43061993 |
tgtttgatttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagctt |
43062092 |
T |
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| Q |
328 |
cacatagataccataaactccaacactcttgcctttgct |
366 |
Q |
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| T |
43062093 |
cacatagataccataaactccaacactcttgtctttgct |
43062131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 237 - 357
Target Start/End: Original strand, 43054751 - 43054871
Alignment:
| Q |
237 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
336 |
Q |
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| T |
43054751 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
43054850 |
T |
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| Q |
337 |
accataaactccaacactctt |
357 |
Q |
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| T |
43054851 |
atcataaactccaacattctt |
43054871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 364
Target Start/End: Original strand, 43049217 - 43049344
Alignment:
| Q |
237 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
336 |
Q |
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| T |
43049217 |
tcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
43049316 |
T |
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| Q |
337 |
accataaactccaacactcttgcctttg |
364 |
Q |
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| T |
43049317 |
atcataaacttcatcactcttgtctttg |
43049344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 43024145 - 43024186
Alignment:
| Q |
316 |
gaagtagagcttcacatagataccataaactccaacactctt |
357 |
Q |
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| T |
43024145 |
gaagtagagtttcacatagatatcataaacttcaacactctt |
43024186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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