View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13420_high_11 (Length: 321)

Name: NF13420_high_11
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13420_high_11
NF13420_high_11
[»] chr8 (1 HSPs)
chr8 (7-302)||(31688269-31688564)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 31688564 - 31688269
Alignment:
Q  7 catgtcgaagaatataggacaatttgctgaaacttagtgcaacaatggcttatttgagtttcttctttgacggcatcaatgagctttgagaaacctcgga 106  Q
    |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688564 catgacgaaaaaaataggacaatttgctgaaacttagtgcaacaatggcttatttgagtttcttctttgacggcatcaatgagctttgagaaacctcgga 31688465  T
Q  107 ggcttccttgtattgaatatcattagataaatttgataaactattacaataatctacttcaatggctccataagtaaataaaattgtaaatatcctacat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688464 ggcttccttgtattgaatatcattagataaatttgataaactattacaataatctacttcaatggctccataagtaaataaaattgtaaatatcctacat 31688365  T
Q  207 cactccaacaaacaatcagaagcacatttatccaaattaaatttaaaatacgttaaaatatatcaataagttaaatattgaattcactctattaag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688364 cactccaacaaacaatcagaagcacatttatccaaattaaatttaaaatacgttaaaatatatcaataagttaaatattgaattcactctattaag 31688269  T

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