View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13420_high_12 (Length: 267)
Name: NF13420_high_12
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13420_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 31038073 - 31038318
Alignment:
| Q |
19 |
aaaagaccaaatgatttattgctatccataaggtctaaataaaagacaatataaataaactgataaatgannnnnnnnncgatatcttttttacatttaa |
118 |
Q |
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| T |
31038073 |
aaaagaccaaatgatttattgctatccataaagtctaaataaaagacaatataaataaactgataaatgattttttt--cgatatcttttttacatttaa |
31038170 |
T |
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| Q |
119 |
gag------agagagaaaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctgg |
212 |
Q |
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| T |
31038171 |
gagagagagagagagagaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctgg |
31038270 |
T |
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| Q |
213 |
tatgccatttctcgcattgttttaaactttttgctttcccctttgcta |
260 |
Q |
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| T |
31038271 |
tatgccatttctcacattgttttaaactttttgctttcccctttgcta |
31038318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 31027927 - 31028015
Alignment:
| Q |
128 |
aaaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatg |
216 |
Q |
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| T |
31027927 |
aaaatatgattaagtttctcaaatttttttatgctacgatcatcttgatttccatattttttgttgtaagggatgaaagctctggtatg |
31028015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 27560636 - 27560559
Alignment:
| Q |
146 |
ttaagtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggtatgccatttc |
223 |
Q |
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| T |
27560636 |
ttaagtttgtttatgctatgatcatatttatttttgtattttttgatgtaagtgatgtaatcgctggtaagccttttc |
27560559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 4655972 - 4656029
Alignment:
| Q |
129 |
aaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
186 |
Q |
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| T |
4655972 |
aaatatgactaagttttttaagtttgtttatactatgttcattttaatttctctattt |
4656029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 4647527 - 4647584
Alignment:
| Q |
129 |
aaatatgattaagtttcttaagtttgtttatggtatgatcattttgatttctctattt |
186 |
Q |
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| T |
4647527 |
aaatatgaccaagttttttaagtttgtttatactatgttcattttaatttctctattt |
4647584 |
T |
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