View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13420_high_6 (Length: 389)
Name: NF13420_high_6
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13420_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 38326421 - 38326050
Alignment:
| Q |
18 |
tcaccaatagcagttaagcacttcttggaatcattcaaaaggatttgagaaccattataaatccatcttgtttgattctcgcagctacagatttcaagtt |
117 |
Q |
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| T |
38326421 |
tcaccaatagcagttaagcacttcttggaatcattcaaaaggatttgagaaccattataaatccatcttgtttgattctcgcagctaccgatttcaagtt |
38326322 |
T |
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| Q |
118 |
cattcttgtcattcacttgaccacattgaccagtaagaggatggtacataatatatgcttcagagactttggaagtaggatctgcattaagaatcagaac |
217 |
Q |
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| T |
38326321 |
cattcttgtcattcacttgaccacattgaccagtaagaggatggtacataatatatgcttcagagactttggaagtaggatctgcattaagaatcagaac |
38326222 |
T |
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| Q |
218 |
gaaaaatcaagttaattttgttattagcagatatatagtcgttttataggagtgatcgcatagctcttatgaagagtaaatagtcgttttagtctctaaa |
317 |
Q |
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| T |
38326221 |
gaaaaatcaagttaattttgttattagcagatatatagtcgttttataagagtgatcgcatagctcttatgaagagtaaatagtcgttttagtctctaaa |
38326122 |
T |
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| Q |
318 |
tgttgaggcgttgtcaacaagtaggaaactagaaaaggagagcgaccacattttgcttttggaaggcccacc |
389 |
Q |
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| T |
38326121 |
tgttgaggcgttgtcaacaagtaggaaactagaaaaggagagcgaccacattttgcttttggaaggcccacc |
38326050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 10766241 - 10766082
Alignment:
| Q |
51 |
ttcaaaaggatttgagaaccattataaatccatcttgtttgattctcgcagctacagatttcaagttcattcttgtcattcacttgaccacattgaccag |
150 |
Q |
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| T |
10766241 |
ttcaaaaagatttgagaacccttataagtccacctcttttgattctcacagctaccaatttcaagcttattgttttcattcacttgtacgcatttaccag |
10766142 |
T |
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| Q |
151 |
taagaggatggtacataatatatgcttcagagactttggaagtaggatctgcattaagaa |
210 |
Q |
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| T |
10766141 |
taagagggtggtacatgatgtatgctttggagcgtttggaagtaggatctgcattaagaa |
10766082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 2105380 - 2105267
Alignment:
| Q |
52 |
tcaaaaggatttgagaaccattataaatccatcttgtttgattctcgcagctacagatttcaagttcattcttgtcattcacttgaccacattgaccagt |
151 |
Q |
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| T |
2105380 |
tcaaaaggatttgagaaccatcataaatccatctcttttgattctcaaagttaccaaattcaagttcatttttgtcattcacctgtgcacgttggccagt |
2105281 |
T |
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| Q |
152 |
aagaggatggtaca |
165 |
Q |
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| T |
2105280 |
tagaggatggtaca |
2105267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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