View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13420_low_1 (Length: 940)

Name: NF13420_low_1
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13420_low_1
NF13420_low_1
[»] chr5 (21 HSPs)
chr5 (1-537)||(15375937-15376474)
chr5 (538-921)||(15376508-15376886)
chr5 (7-63)||(15469919-15469974)
chr5 (1-61)||(19283910-19283969)
chr5 (1-61)||(20744866-20744925)
chr5 (3-61)||(18937733-18937790)
chr5 (1-43)||(19086234-19086276)
chr5 (4-49)||(19004284-19004329)
chr5 (1-50)||(24140438-24140486)
chr5 (1-46)||(25550559-25550604)
chr5 (13-61)||(15544035-15544083)
chr5 (1-61)||(18208304-18208362)
chr5 (1-61)||(24267010-24267068)
chr5 (1-61)||(24343641-24343699)
chr5 (1-44)||(17185464-17185507)
chr5 (82-129)||(18757384-18757431)
chr5 (1-51)||(20315485-20315534)
chr5 (3-61)||(23380314-23380372)
chr5 (12-61)||(17769461-17769510)
chr5 (6-43)||(20419958-20419995)
chr5 (1-46)||(25402392-25402437)
[»] chr6 (30 HSPs)
chr6 (1-61)||(9726007-9726066)
chr6 (1-61)||(25927358-25927417)
chr6 (3-61)||(21907417-21907474)
chr6 (3-54)||(12183388-12183438)
chr6 (1-43)||(17729154-17729196)
chr6 (1-63)||(21672490-21672551)
chr6 (1-55)||(27737744-27737797)
chr6 (1-63)||(28933715-28933776)
chr6 (1-46)||(5624639-5624684)
chr6 (1-46)||(14079499-14079544)
chr6 (5-62)||(20005938-20005994)
chr6 (1-46)||(21932107-21932152)
chr6 (1-46)||(23143721-23143766)
chr6 (1-61)||(8241262-8241321)
chr6 (1-49)||(9516781-9516829)
chr6 (1-61)||(11176935-11176994)
chr6 (1-61)||(23844520-23844579)
chr6 (3-59)||(28589487-28589543)
chr6 (1-44)||(4339736-4339779)
chr6 (10-61)||(15466355-15466405)
chr6 (1-40)||(23645822-23645861)
chr6 (6-49)||(27124552-27124595)
chr6 (581-628)||(32520093-32520140)
chr6 (3-61)||(7543017-7543074)
chr6 (11-61)||(20722240-20722290)
chr6 (1-63)||(21679906-21679967)
chr6 (3-61)||(22567825-22567882)
chr6 (10-59)||(8039195-8039243)
chr6 (1-46)||(20145115-20145160)
chr6 (1-46)||(22187679-22187724)
[»] chr2 (19 HSPs)
chr2 (1-61)||(17743531-17743590)
chr2 (1-63)||(27909174-27909235)
chr2 (82-140)||(36461454-36461512)
chr2 (1-46)||(29719286-29719331)
chr2 (1-61)||(8503125-8503185)
chr2 (1-61)||(32085448-32085507)
chr2 (1-43)||(20174690-20174732)
chr2 (1-43)||(31804955-31804997)
chr2 (4-61)||(19200192-19200248)
chr2 (1-61)||(8447105-8447164)
chr2 (1-61)||(12557764-12557823)
chr2 (1-41)||(28770498-28770538)
chr2 (1-61)||(28925507-28925565)
chr2 (1-44)||(11382808-11382851)
chr2 (1-48)||(25196008-25196054)
chr2 (3-46)||(25888277-25888320)
chr2 (3-46)||(45553129-45553172)
chr2 (1-63)||(30411661-30411722)
chr2 (1-46)||(15339237-15339282)
[»] chr4 (31 HSPs)
chr4 (75-138)||(10581574-10581637)
chr4 (1-64)||(17671984-17672046)
chr4 (1-62)||(14648879-14648939)
chr4 (1-61)||(13692724-13692783)
chr4 (3-61)||(9737566-9737623)
chr4 (1-62)||(7582281-7582341)
chr4 (1-45)||(13908854-13908898)
chr4 (1-45)||(17709757-17709801)
chr4 (1-61)||(21323930-21323989)
chr4 (6-45)||(13587231-13587270)
chr4 (6-61)||(20829798-20829852)
chr4 (1-43)||(11521246-11521288)
chr4 (1-59)||(12318420-12318477)
chr4 (3-61)||(17951353-17951410)
chr4 (3-61)||(17955205-17955262)
chr4 (661-711)||(45122313-45122363)
chr4 (1-46)||(12578321-12578366)
chr4 (1-46)||(13128929-13128974)
chr4 (1-58)||(20314988-20315044)
chr4 (1-46)||(22176017-22176062)
chr4 (1-61)||(15047113-15047172)
chr4 (1-61)||(15107252-15107311)
chr4 (1-49)||(17216813-17216861)
chr4 (1-61)||(19492755-19492814)
chr4 (1-61)||(19882625-19882684)
chr4 (1-44)||(5679206-5679249)
chr4 (1-60)||(11490518-11490576)
chr4 (1-40)||(22526369-22526408)
chr4 (13-63)||(9052657-9052706)
chr4 (3-45)||(19562235-19562277)
chr4 (13-62)||(10106994-10107043)
[»] chr7 (31 HSPs)
chr7 (1-47)||(8054544-8054590)
chr7 (1-46)||(23100007-23100052)
chr7 (1-61)||(7318258-7318317)
chr7 (1-60)||(13759915-13759973)
chr7 (1-59)||(9864381-9864438)
chr7 (1-63)||(10587079-10587140)
chr7 (1-62)||(8979061-8979121)
chr7 (1-45)||(18661590-18661634)
chr7 (6-45)||(9720964-9721003)
chr7 (1-47)||(8054113-8054159)
chr7 (3-61)||(10937586-10937644)
chr7 (1-63)||(15869578-15869639)
chr7 (4-49)||(20582255-20582300)
chr7 (1-61)||(5047442-5047501)
chr7 (1-61)||(9574392-9574451)
chr7 (1-61)||(21230297-21230356)
chr7 (1-61)||(31492915-31492974)
chr7 (3-62)||(5530005-5530063)
chr7 (575-650)||(12427929-12428004)
chr7 (10-61)||(14196036-14196086)
chr7 (6-61)||(19153283-19153337)
chr7 (6-61)||(20752682-20752736)
chr7 (279-322)||(23940521-23940564)
chr7 (1-47)||(18369035-18369081)
chr7 (3-61)||(18449226-18449284)
chr7 (4-61)||(1584530-1584585)
chr7 (1-54)||(2563810-2563861)
chr7 (1-62)||(12329666-12329726)
chr7 (5-46)||(12391184-12391225)
chr7 (289-322)||(26979703-26979736)
chr7 (601-650)||(42709956-42710005)
[»] chr3 (18 HSPs)
chr3 (1-63)||(10917901-10917962)
chr3 (1-61)||(12805945-12806004)
chr3 (1-44)||(22349410-22349453)
chr3 (3-61)||(19908292-19908349)
chr3 (4-61)||(5508321-5508377)
chr3 (1-62)||(6289887-6289947)
chr3 (1-46)||(21301917-21301962)
chr3 (580-650)||(33429089-33429159)
chr3 (581-650)||(1163424-1163493)
chr3 (1-46)||(10744901-10744946)
chr3 (1-54)||(21303409-21303461)
chr3 (1-61)||(12759371-12759431)
chr3 (1-44)||(11533030-11533073)
chr3 (1-44)||(16245784-16245827)
chr3 (277-320)||(35052456-35052499)
chr3 (4-46)||(3116476-3116518)
chr3 (1-63)||(41508350-41508411)
chr3 (1-38)||(821569-821606)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-62)||(168353-168413)
[»] chr8 (16 HSPs)
chr8 (1-61)||(24904614-24904677)
chr8 (75-140)||(24209531-24209596)
chr8 (4-61)||(28276815-28276871)
chr8 (1-46)||(29382416-29382461)
chr8 (1-61)||(5850926-5850985)
chr8 (1-61)||(17101948-17102007)
chr8 (1-61)||(26008007-26008067)
chr8 (1-64)||(14528131-14528193)
chr8 (3-61)||(30235362-30235419)
chr8 (1-61)||(30806552-30806611)
chr8 (1-40)||(30783796-30783835)
chr8 (10-61)||(31288342-31288393)
chr8 (11-61)||(13697847-13697896)
chr8 (3-61)||(19786716-19786773)
chr8 (1-46)||(24114337-24114382)
chr8 (1-62)||(25182483-25182543)
[»] scaffold0008 (2 HSPs)
scaffold0008 (1-61)||(54845-54904)
scaffold0008 (1-66)||(48245-48309)
[»] chr1 (26 HSPs)
chr1 (1-49)||(15544021-15544069)
chr1 (1-49)||(21988037-21988085)
chr1 (1-61)||(27117773-27117832)
chr1 (2-61)||(18736296-18736354)
chr1 (1-59)||(24306360-24306417)
chr1 (3-53)||(25405687-25405737)
chr1 (1-46)||(21449088-21449133)
chr1 (4-61)||(23038069-23038125)
chr1 (1-49)||(12208597-12208645)
chr1 (1-61)||(17610311-17610370)
chr1 (1-61)||(17837502-17837561)
chr1 (1-61)||(26540880-26540939)
chr1 (1-61)||(29242504-29242563)
chr1 (616-711)||(6219603-6219698)
chr1 (4-63)||(17359145-17359203)
chr1 (6-61)||(33712648-33712702)
chr1 (1-46)||(13345391-13345436)
chr1 (4-61)||(15813212-15813268)
chr1 (1-46)||(22664205-22664250)
chr1 (1-46)||(24281276-24281321)
chr1 (1-46)||(32383053-32383098)
chr1 (1-61)||(3591708-3591767)
chr1 (1-61)||(9787934-9787993)
chr1 (1-61)||(14779550-14779609)
chr1 (605-650)||(7790319-7790364)
chr1 (1-62)||(16787781-16787841)
[»] scaffold0622 (1 HSPs)
scaffold0622 (1-64)||(710-772)
[»] scaffold0838 (1 HSPs)
scaffold0838 (1-44)||(2371-2414)
[»] scaffold0832 (1 HSPs)
scaffold0832 (1-44)||(2402-2445)
[»] scaffold0032 (1 HSPs)
scaffold0032 (82-130)||(25196-25244)
[»] scaffold0001 (1 HSPs)
scaffold0001 (2-46)||(81486-81530)
[»] scaffold0340 (1 HSPs)
scaffold0340 (543-629)||(10937-11023)
[»] scaffold0016 (1 HSPs)
scaffold0016 (3-61)||(12093-12151)


Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 15375937 - 15376474
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagtcctgtggatattttaatactttcaaattgatatgctt 100  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  | |  ||||||||||||||||||||||||||||||    
T  15375937 tctacttatcattttattatttggtaaacgatttggtacacttgccataatccgaccatcagtgatct--atattttaatactttcaaattgatatgctt 15376034  T
Q  101 agatgaatgcctaacttgatcaggatgttatcataattgtttaacatgatattgacttgatcacgttaaacaattatgataacatcggtctctacatatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376035 agatgaatgcctaacttgatcaggatgttatcataattgtttaacatgatattgacttgatcacgttaaacaattatgataacatcggtctctacatatt 15376134  T
Q  201 attttcattggagctaccaattgagttgtcttacatgattattattgttaattttaacaaaggtaatattaattgtccaattctataatgcacaagtgag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  15376135 attttcattggagctaccaattgagttgtcttacatgattattattgttaattttaacaaaggtaatgttaattgtccaattctataatacacaagtgag 15376234  T
Q  301 ataaatcttgcatcatgcacaacgtaatttgcatcaatttgtcaataaatctaactgttaagttgaatgaaacatgtttcttagaaag--nnnnnnnnnt 398  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||           |    
T  15376235 ataaatcttgcatcatgcacaacgtaatttccttcaatttgtcaataaatctaaccgttaagttgaatgaaacctgtttcttagaaagaaagaaaaaaat 15376334  T
Q  399 taaatgaaacatgatgtgannnnnnnatccaatagtag-aaaaacacttgtatacaatgcaatatcattcgtagacaaaacctatttttagaagtaaacc 497  Q
    |||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |  ||||||||    
T  15376335 taaatgaaacatgatgtgatttttttatccaatagtagaaaaaacacttgtatacaatgcaatatcatttgtagacaaaacctattttcaatagtaaacc 15376434  T
Q  498 accaaattgacccctgtctttataagccaatttcaaacta 537  Q
    ||||||||||| ||  |||||||||| |||| ||||||||    
T  15376435 accaaattgactccgatctttataagtcaatctcaaacta 15376474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 538 - 921
Target Start/End: Original strand, 15376508 - 15376886
Alignment:
Q  538 ctgattttgtgaaaaatttctcaatttaatatttatttttacgtttttatcacatgacgataaacttaattaaaaaacttttgacaaagacattaaatag 637  Q
    |||| |||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15376508 ctgactttgtgaaaaatttctcaatttgatctttatctttacgtttttatcacatgacgataaacttaattaaaaaacttttgacaaagacattaaatag 15376607  T
Q  638 tttaaaatattaacataatcaaatattacttttagaatgacttacataaacataaatcaatttgatggtttacttctattttaa----aaataagtatca 733  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |          ||| ||||| |||| |||||||||||    |||||| |||||    
T  15376608 tttaaaatattaacataatcaaatattacttttagaatgacttacaga----------aatatgatgatttatttctattttaaaaataaataaatatca 15376697  T
Q  734 ctaaattttaccaaggggttgttgaggtaattttcaccctccacaagcacatgctttgtacaactggcgctaaaaaatcagaaaaccca-nnnnnnnccc 832  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||        |||    
T  15376698 ctaaattttaccaaggggttgttgaggtaattttctgcctccacaagcacatgctttgtacaactggcgctaaaaaatcagaaaacccattttttttccc 15376797  T
Q  833 gggaaaccaaaaatctccttccaaaatcgcatatttatattcaaacaaacacccaaagcacttacaacaagtacctttcatcaacaacc 921  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  15376798 gggaaaccaaaaatctccttccaaaatcgcatatttatattcaaacaaacactcaaagaacttacaacaagtacctttcatcaacaacc 15376886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 15469974 - 15469919
Alignment:
Q  7 tatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||    
T  15469974 tatcactttattacttggtaaacgatttggtacacttgcc-taatccgaccgtcagt 15469919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19283910 - 19283969
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||||||||||||| ||||||||| || ||||| || ||||||||||||||    
T  19283910 tctacttatcactttattatttggtaaacgatttagtgcactttcc-taatccgaccatca 19283969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20744866 - 20744925
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||| ||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||    
T  20744866 tctacatatcactttattacttggtaaatgatttggtacacttgccat-atccgaccatca 20744925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 18937790 - 18937733
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||| ||   ||||||||||||||||||||| ||||||||||||||    
T  18937790 tacttatcactttattacttaataaacgatttggtacacttgcc-taatccgaccatca 18937733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19086234 - 19086276
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacactt 43  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  19086234 tctacttatcactttattacttggtaaacgatttggtacactt 19086276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 19004284 - 19004329
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgccata 49  Q
    |||||||||||||||| |||| ||||||||| ||||||||||||||    
T  19004284 acttatcactttattacttggtaaacgatttagtacacttgccata 19004329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 24140486 - 24140438
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataa 50  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||||    
T  24140486 tctacttatcactttattacttggtaaacga-ttggtacacttgccataa 24140438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25550559 - 25550604
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| |||||||||| ||||||||||    
T  25550559 tctacttatcactttattacttggtaaacgatttgatacacttgcc 25550604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 15544083 - 15544035
Alignment:
Q  13 tttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||| |||| |||||||||||||||||||||  |||||||||||||    
T  15544083 tttattacttggtaaacgatttggtacacttgcctaaatccgaccatca 15544035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18208304 - 18208362
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||| |||||||||| || | ||||||||||||||||||||| ||||||||||||||    
T  18208304 tctactta-cactttattactttgtaaacgatttggtacacttgcc-taatccgaccatca 18208362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24267010 - 24267068
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||| |||||||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  24267010 tctactta-cactttattacttggtaaacgatttggtacacttgcc-taattcgaccatca 24267068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24343641 - 24343699
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||| |||||||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  24343641 tctactta-cactttattacttggtaaacgatttggtacacttgcc-taattcgaccatca 24343699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17185507 - 17185464
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttg 44  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||    
T  17185507 tctacttatcactttattatttggtaaatgatttagtacacttg 17185464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 18757384 - 18757431
Alignment:
Q  82 ctttcaaattgatatgcttagatgaatgcctaacttgatcaggatgtt 129  Q
    |||||||| | | ||||||| |||||||||||||||||||||||||||    
T  18757384 ctttcaaactaacatgcttaaatgaatgcctaacttgatcaggatgtt 18757431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20315485 - 20315534
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataat 51  Q
    |||||||||||| |||||| |||| |||||| |||||||||||||||||||    
T  20315485 tctacttatcacattattacttggtaaacga-ttggtacacttgccataat 20315534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 23380314 - 23380372
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||| ||||||| |||| |||| ||||||||||||||||  |||||||| ||||    
T  23380314 tacttatcagtttattacttggtaaacaatttggtacacttgcctaaatccgacaatca 23380372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 17769461 - 17769510
Alignment:
Q  12 ctttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||| |||| ||||||||||||||||||||   |||||||||||||    
T  17769461 ctttattacttggtaaacgatttggtacacttgcataaatccgaccatca 17769510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 20419995 - 20419958
Alignment:
Q  6 ttatcactttattatttggcaaacgatttggtacactt 43  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  20419995 ttatcactttattacttggtaaacgatttggtacactt 20419958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25402392 - 25402437
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||  ||| ||||||||| ||||||||||||||||    
T  25402392 tctacttatcacttccttacttggcaaacaatttggtacacttgcc 25402437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9726066 - 9726007
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  9726066 tctacttatcactttattacttggtaaacgatttggtacacttgcc-taatccgaccatca 9726007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25927358 - 25927417
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||||    
T  25927358 tctacttatcactttattacttggtaaacgttttggtacacttgcc-taatccgaccatca 25927417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 21907474 - 21907417
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||    
T  21907474 tacttatcactttattacttggtaaacgatttggtatacttgcc-taatccgaccatca 21907417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 12183388 - 12183438
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccg 54  Q
    ||||||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  12183388 tacttatcactttattacttggtaaacgatttggtacacttg-cataatccg 12183438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17729196 - 17729154
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacactt 43  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  17729196 tctacttatcactttattacttggtaaacgatttggtacactt 17729154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21672490 - 21672551
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||| |||||||  |||||||    
T  21672490 tctacttatcactttattacttggtaaacgatttggtgcacttgcc-taatccgcacatcagt 21672551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27737744 - 27737797
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccga 55  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||    
T  27737744 tctacttatcactttattacttggtaaacgatttagtacacttgcc-taatccga 27737797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28933715 - 28933776
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    |||||||||||||||||||||||  |||| || |||||||||| || ||||||||||||||||    
T  28933715 tctacttatcactttattatttgctaaacaatatggtacactttcc-taatccgaccatcagt 28933776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5624684 - 5624639
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||    
T  5624684 tctacttatcactttattacttggtaaacgatttggtacatttgcc 5624639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14079499 - 14079544
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||    
T  14079499 tctacttatcactttataacttggtaaacgatttggtacacttgcc 14079544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 20005938 - 20005994
Alignment:
Q  5 cttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||||||||||| |||| ||||||||||||||||||| | | |||||||||||||    
T  20005938 cttatcactttattacttggtaaacgatttggtacacttgtcgt-atccgaccatcag 20005994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21932107 - 21932152
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||    
T  21932107 tctacttatcactttattacttggtaaacaatttggtacacttgcc 21932152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23143766 - 23143721
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||||    
T  23143766 tctacttatcactttattaattggtaaatgatttggtacacttgcc 23143721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 8241321 - 8241262
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||| ||| || | ||||||||||||||||||||| ||||||||| ||||    
T  8241321 tctacttatcactttcttacttcgtaaacgatttggtacacttgcc-taatccgactatca 8241262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9516829 - 9516781
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccata 49  Q
    ||||||||||||||||||| | || ||||||||||||||||||| ||||    
T  9516829 tctacttatcactttattactaggtaaacgatttggtacacttgtcata 9516781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 11176994 - 11176935
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||||| || | || |||||||| |||||||||||| ||||||||||||||    
T  11176994 tctacttatcactttagtactcggtaaacgattgggtacacttgcc-taatccgaccatca 11176935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23844520 - 23844579
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||  ||| ||||||||||||    
T  23844520 tctacttatcattttattacttggtaaacgatttggtacacttatcat-atccgaccatca 23844579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 28589487 - 28589543
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccat 59  Q
    ||||||||||||| |||||||  |||||||||||||||||||||  ||| |||||||    
T  28589487 tacttatcactttgttatttgataaacgatttggtacacttgcctaaattcgaccat 28589543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4339779 - 4339736
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttg 44  Q
    |||||||||||||||||||||||  |||| ||||||||||||||    
T  4339779 tctacttatcactttattatttgataaacaatttggtacacttg 4339736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 15466405 - 15466355
Alignment:
Q  10 cactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||| |||| ||||||||||||||||||||| ||||||| ||||||    
T  15466405 cactttattacttggtaaacgatttggtacacttgcc-taatccggccatca 15466355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23645822 - 23645861
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtaca 40  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  23645822 tctacttatcactttattacttggtaaacgatttggtaca 23645861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 27124552 - 27124595
Alignment:
Q  6 ttatcactttattatttggcaaacgatttggtacacttgccata 49  Q
    |||||||||||||| |||| |||||||||||||||||| |||||    
T  27124552 ttatcactttattacttggtaaacgatttggtacactttccata 27124595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 628
Target Start/End: Complemental strand, 32520140 - 32520093
Alignment:
Q  581 tttttatcacatgacgataaacttaattaaaaaacttttgacaaagac 628  Q
    ||||| ||||||||||| | |||||||| |||||||||||||||||||    
T  32520140 tttttgtcacatgacgagacacttaattgaaaaacttttgacaaagac 32520093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 7543017 - 7543074
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||| |||| |||| ||||| |||| ||||| ||||||||||||||    
T  7543017 tacttatcactttattacttggtaaacaatttgatacatttgcc-taatccgaccatca 7543074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 20722240 - 20722290
Alignment:
Q  11 actttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||| |||| ||||||||||||||| |||||  |||||||||||||    
T  20722240 actttattacttggtaaacgatttggtacatttgcctaaatccgaccatca 20722290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21679906 - 21679967
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    ||||||||||||||||||| || | |||||||||||| |||||||| |||||||  |||||||    
T  21679906 tctacttatcactttattacttagtaaacgatttggtgcacttgcc-taatccgcacatcagt 21679967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 22567882 - 22567825
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||| |||| |||||| |||| |||| |||||||||||||||| ||||||||||||||    
T  22567882 tacttttcacgttattacttggtaaacaatttggtacacttgcc-taatccgaccatca 22567825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 8039195 - 8039243
Alignment:
Q  10 cactttattatttggcaaacgatttggtacacttgccataatccgaccat 59  Q
    |||||||||| |||| ||||||||||| ||||||||| ||||||||||||    
T  8039195 cactttattacttggtaaacgatttggcacacttgcc-taatccgaccat 8039243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20145115 - 20145160
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| ||||  ||| ||||||||||||||||    
T  20145115 tctacttatcactttattacttggtgaacaatttggtacacttgcc 20145160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22187724 - 22187679
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| ||||  ||| ||||||||||||||||    
T  22187724 tctacttatcactttattacttggtgaacaatttggtacacttgcc 22187679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17743531 - 17743590
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  17743531 tctacttatcactttattacttggtaaacgatttggtacacttgccat-atccgaccatca 17743590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27909174 - 27909235
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||||||||    
T  27909174 tctacttatcactttattacttggtaaacgatttggtacacttgccat-atctgaccatcagt 27909235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 36461454 - 36461512
Alignment:
Q  82 ctttcaaattgatatgcttagatgaatgcctaacttgatcaggatgttatcataattgt 140  Q
    |||||||| ||||||||||||||||||||||| |||||| || |||||| |||||||||    
T  36461454 ctttcaaactgatatgcttagatgaatgcctagcttgattagaatgttagcataattgt 36461512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29719286 - 29719331
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||    
T  29719286 tctacttatcactttattacttggtaaacgatttggtacacttgcc 29719331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8503125 - 8503185
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||  ||| |||||||||    
T  8503125 tctacttatcacgttattacttggtaaacgatttggtacacttgcctaaatacgaccatca 8503185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 32085507 - 32085448
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| |||| ||||||||||||| || ||||||||||||||    
T  32085507 tctacttatcactttattacttggtaaacaatttggtacacttacc-taatccgaccatca 32085448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20174690 - 20174732
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacactt 43  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  20174690 tctacttatcactttattacttggtaaacgatttggtacactt 20174732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31804955 - 31804997
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacactt 43  Q
    |||||||||||||||||||||||| |||| |||||||||||||    
T  31804955 tctacttatcactttattatttggtaaacaatttggtacactt 31804997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 19200192 - 19200248
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||| ||| ||||||||||    
T  19200192 acttatcacattattatttggtaaaagatttggtacacttgcc-taacccgaccatca 19200248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8447105 - 8447164
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||||  ||| |||||||||    
T  8447105 tctacttat-actttattacttggtaaacgatttggtacacttgcctaaattcgaccatca 8447164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12557764 - 12557823
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||| |||||||||| |||| ||| |||||||||||||||||  |||||||||||||    
T  12557764 tctactta-cactttattacttggtaaaagatttggtacacttgcctaaatccgaccatca 12557823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28770498 - 28770538
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacac 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  28770498 tctacttatcactttattatttggtaaaggatttggtacac 28770538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28925565 - 28925507
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| ||||  |||||||| ||||||||||||| ||||||||||||    
T  28925565 tctacttatcactttattacttgg-taacgatttagtacacttgccat-atccgaccatca 28925507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11382808 - 11382851
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttg 44  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||    
T  11382808 tctacttatcactttattatctggtaaacgatttgatacacttg 11382851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25196054 - 25196008
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccat 48  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  25196054 tctacttatcactttattacttggtaaacga-ttggtacacttgccat 25196008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 25888277 - 25888320
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||| |||| |||| ||||||||||||||||    
T  25888277 tacttatcactttattacttggtaaacaatttggtacacttgcc 25888320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 45553172 - 45553129
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||| |||  |||||||||||||||||||||    
T  45553172 tacttatcactttattacttgataaacgatttggtacacttgcc 45553129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 30411722 - 30411661
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    |||||||||||||||||||  ||| ||| ||||| ||||||||| ||| ||||||||||||||    
T  30411722 tctacttatcactttattacatggtaaaagatttcgtacacttgtcat-atccgaccatcagt 30411661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15339282 - 15339237
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||| ||||||||||| |||| ||| |||||||||||||||||    
T  15339282 tctacttttcactttattacttggtaaatgatttggtacacttgcc 15339237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 10581574 - 10581637
Alignment:
Q  75 tttaatactttcaaattgatatgcttagatgaatgcctaacttgatcaggatgttatcataatt 138  Q
    |||||| |||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||||    
T  10581574 tttaatgctttcaaattaatatgcttatatgaatgtctaacttgatcaggatgttagcataatt 10581637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17672046 - 17671984
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagtc 64  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||||    
T  17672046 tctacttatcactttattacttggtaaacgatttggtacacttgcc-taatccggccatcagtc 17671984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14648939 - 14648879
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||    
T  14648939 tctacttatcactttattacttggtaaacgatttggtacacttgcc-taatctgaccatcag 14648879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 13692724 - 13692783
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  13692724 tctacttatcactttattacttggtaaacgatttggtacacttgcc-taatctgaccatca 13692783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 9737566 - 9737623
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||| |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||    
T  9737566 tactgatcactttattacttggtaaacgatttggtacacttgcc-taatccgaccatca 9737623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7582341 - 7582281
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||||||||||||||| |||| ||| |||||||||||||| |||| |||||||||||||    
T  7582341 tctacttatcactttattacttggtaaatgatttggtacactttccat-atccgaccatcag 7582281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13908898 - 13908854
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgc 45  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  13908898 tctacttatcactttattacttggtaaacgatttggtacacttgc 13908854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17709801 - 17709757
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgc 45  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||    
T  17709801 tctacttatcactttattacttggtaaacgatttggtacacttgc 17709757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21323930 - 21323989
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||| ||||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  21323930 tctactgatcacattattatttggtaaacgatttagtacacttgcc-taatccgaccatca 21323989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 13587270 - 13587231
Alignment:
Q  6 ttatcactttattatttggcaaacgatttggtacacttgc 45  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  13587270 ttatcactttattatttggtaaacgatttggtacacttgc 13587231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 20829798 - 20829852
Alignment:
Q  6 ttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||    
T  20829798 ttatcactttattacttggtaaacgatttggtacacttgcc-taatccggccatca 20829852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11521246 - 11521288
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacactt 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  11521246 tctacttatcactttattatttgataaacgatttggtacactt 11521288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12318477 - 12318420
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccat 59  Q
    ||||||||||||||||||| ||||  || ||||||||||||||||| ||||||||||||    
T  12318477 tctacttatcactttattacttggttaatgatttggtacacttgcc-taatccgaccat 12318420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 17951353 - 17951410
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||| || |||| ||||||||||||||||||| | ||||||||||||||    
T  17951353 tacttatcactttagtacttggtaaacgatttggtacacttgtc-taatccgaccatca 17951410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 17955205 - 17955262
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||| || |||| ||||||||||||||||||| | ||||||||||||||    
T  17955205 tacttatcactttagtacttggtaaacgatttggtacacttgtc-taatccgaccatca 17955262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 661 - 711
Target Start/End: Complemental strand, 45122363 - 45122313
Alignment:
Q  661 tattacttttagaatgacttacataaacataaatcaatttgatggtttact 711  Q
    ||||| ||| ||||||||||||| ||||||| |||||||||||||||||||    
T  45122363 tattaatttaagaatgacttacaaaaacatagatcaatttgatggtttact 45122313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12578321 - 12578366
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||    
T  12578321 tctaattatcactttattatttggtaaatgatttggtacacttgcc 12578366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13128929 - 13128974
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||||    
T  13128929 tctacttatcattttattacttggtaaacgatttggtacacttgcc 13128974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20315044 - 20314988
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgacca 58  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||| ||| |||||||||    
T  20315044 tctacttatcaatttattacttggtaaacgatttggtacacttg-catgatccgacca 20314988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22176017 - 22176062
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||    
T  22176017 tctacttatcactttattacttgataaacgatttggtacacttgcc 22176062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15047172 - 15047113
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||||||||||| |||||| || |||||| |||||||    
T  15047172 tctacttatcactttattacttggtaaacgatttggaacactttcc-taatccaaccatca 15047113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15107252 - 15107311
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||||||||||| |||||| || |||||| |||||||    
T  15107252 tctacttatcactttattacttggtaaacgatttggaacactttcc-taatccaaccatca 15107311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17216861 - 17216813
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccata 49  Q
    ||||||||||||||||||  |||| ||||||||||||||| ||||||||    
T  17216861 tctacttatcactttattgcttggtaaacgatttggtacatttgccata 17216813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19492755 - 19492814
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||| |||||||| |||| |||||||||||||||||||  || ||||||||||||    
T  19492755 tctacttatccctttattacttggtaaacgatttggtacacttgatat-atccgaccatca 19492814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19882684 - 19882625
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||| |||||||||||| |||  ||||||||| ||||||||||| ||||||||||||||    
T  19882684 tctactaatcactttattacttgataaacgattttgtacacttgcc-taatccgaccatca 19882625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 5679249 - 5679206
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttg 44  Q
    |||||| |||||||||||| |||| |||||||||||||||||||    
T  5679249 tctactaatcactttattacttggtaaacgatttggtacacttg 5679206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11490576 - 11490518
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatc 60  Q
    ||||||||||||||||||| |||  |||| ||||||||||||| || |||||||||||||    
T  11490576 tctacttatcactttattacttgataaacaatttggtacactttcc-taatccgaccatc 11490518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22526408 - 22526369
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtaca 40  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  22526408 tctacttatcactttattatttgataaacgatttggtaca 22526369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 9052706 - 9052657
Alignment:
Q  13 tttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    ||||||| |||| ||| ||||||||||||||||| ||||||||||||||||    
T  9052706 tttattacttggtaaatgatttggtacacttgcc-taatccgaccatcagt 9052657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 19562235 - 19562277
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgc 45  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||    
T  19562235 tacttatcactttattacttggtaaatgatttggtacacttgc 19562277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 10107043 - 10106994
Alignment:
Q  13 tttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||| |||| |||||||||| ||||||||||  ||||||||||||||    
T  10107043 tttattacttggtaaacgatttgctacacttgcctaaatccgaccatcag 10106994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8054544 - 8054590
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcca 47  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  8054544 tctacttatcactttattatttggtaaacgatttggtacacttgcca 8054590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23100007 - 23100052
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  23100007 tctacttatcactttattatttggtaaacgatttggtacacttgcc 23100052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7318317 - 7318258
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||||||||||    
T  7318317 tctacttatcactttattacttggtaaacgatatggtacacttgcc-taatccgaccatca 7318258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13759915 - 13759973
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatc 60  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||| |||||||||||    
T  13759915 tctacttatcactttattaattggtaaacgatttggtacacttaccat-atccgaccatc 13759973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9864381 - 9864438
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccat 59  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||    
T  9864381 tctacttatcactttattacttggtaaacaatttggtacacttgcc-taatccgaccat 9864438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10587079 - 10587140
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| |||||| ||| |||||    
T  10587079 tctacttatcactttattacttggtaaacgatttggtacacttgcc-taatccaaccttcagt 10587140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8979061 - 8979121
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||||||||||||||| |||| ||| |||||||||||||| |||| |||||||||||||    
T  8979061 tctacttatcactttattacttggtaaatgatttggtacactttccat-atccgaccatcag 8979121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18661634 - 18661590
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgc 45  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  18661634 tctacttatcactttattgtttggtaaacgatttggtacacttgc 18661590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 9721003 - 9720964
Alignment:
Q  6 ttatcactttattatttggcaaacgatttggtacacttgc 45  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  9721003 ttatcactttattatttggtaaacgatttggtacacttgc 9720964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 8054113 - 8054159
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcca 47  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||||    
T  8054113 tctaattatcactttattacttggtaaacgatttggtacacttgcca 8054159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 10937644 - 10937586
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||  ||||| |||||||    
T  10937644 tacttatcactttattacttggtaaacgatttgatacacttgcctaaatccaaccatca 10937586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 15869639 - 15869578
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    ||||||||||||||||||| |||| |||||||||| |||||||||| |||||| || ||||||    
T  15869639 tctacttatcactttattacttggtaaacgatttgatacacttgcc-taatccaacaatcagt 15869578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 20582300 - 20582255
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgccata 49  Q
    |||||||||||||||| |||| |||||||||||||| |||||||||    
T  20582300 acttatcactttattaattggtaaacgatttggtacccttgccata 20582255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5047442 - 5047501
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||| |||||||||| |||| ||| |||||||||||||||||  |||||||||||||    
T  5047442 tctactta-cactttattacttggtaaatgatttggtacacttgcctaaatccgaccatca 5047501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9574451 - 9574392
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||  |||| ||||||||| ||||||||||| ||||| ||||||||    
T  9574451 tctacttatcactttattccttggtaaacgatttagtacacttgcc-taatctgaccatca 9574392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 21230356 - 21230297
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||| |||||||||||| |||||||||| || ||||||| |||||| |||||||    
T  21230356 tctacttatcattttattatttggtaaacgatttgatatacttgcc-taatccaaccatca 21230297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 31492974 - 31492915
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||||||||  ||| |||||||||| |||||||||| | ||||||||||||    
T  31492974 tctacttatcactttattacctggtaaacgatttgatacacttgcc-tgatccgaccatca 31492915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 5530063 - 5530005
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||||| ||||||| |||| |||| ||||||||||| |||| |||||||||||||||    
T  5530063 tacttatcattttattacttggtaaacaatttggtacacctgcc-taatccgaccatcag 5530005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 650
Target Start/End: Original strand, 12427929 - 12428004
Alignment:
Q  575 tttacgtttttatcacatgacgataaacttaattaaaaaacttttgacaaagacattaaatagtttaaaatattaa 650  Q
    |||| |||||| ||||||||||| | ||  |||| |||||||||||||||||||||  | |||||| |||||||||    
T  12427929 tttatgtttttgtcacatgacgagagaccaaattgaaaaacttttgacaaagacatggactagtttgaaatattaa 12428004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 14196036 - 14196086
Alignment:
Q  10 cactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||  ||||||||||||||||||||| ||||| ||||||||    
T  14196036 cactttattatttgataaacgatttggtacacttgcc-taatctgaccatca 14196086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 19153337 - 19153283
Alignment:
Q  6 ttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||| |||| ||| ||||||||||||||||| ||||| ||||||||    
T  19153337 ttatcactttattacttggtaaaagatttggtacacttgcc-taatctgaccatca 19153283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 20752736 - 20752682
Alignment:
Q  6 ttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||| |||| ||| ||||||||||||||||| ||||| ||||||||    
T  20752736 ttatcactttattacttggtaaaagatttggtacacttgcc-taatctgaccatca 20752682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 23940521 - 23940564
Alignment:
Q  279 aattctataatgcacaagtgagataaatcttgcatcatgcacaa 322  Q
    |||||||| ||||||||||||||||  |||||||||||||||||    
T  23940521 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaa 23940564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18369035 - 18369081
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcca 47  Q
    ||||||||||||||||||| |||| |||| |||| ||||||||||||    
T  18369035 tctacttatcactttattacttggtaaactatttagtacacttgcca 18369081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 18449284 - 18449226
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||| ||||||||||| |||| |||| ||||| ||||||||||  |||||||||||||    
T  18449284 tacttctcactttattacttggtaaacaatttgatacacttgcctaaatccgaccatca 18449226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 1584585 - 1584530
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||||| |||| ||| || |||||||||||||| ||||||||||||||    
T  1584585 acttatcactttattacttggtaaatga-ttggtacacttgcc-taatccgaccatca 1584530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2563861 - 2563810
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccg 54  Q
    |||||||| |||||||||| |||| ||||||||||||||||||| |||||||||    
T  2563861 tctactta-cactttattacttggtaaacgatttggtacacttg-cataatccg 2563810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12329726 - 12329666
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    |||| |||||| ||| ||| |||| ||||||||||||||| ||||| |||||||||||||||    
T  12329726 tctatttatcaatttcttacttggtaaacgatttggtacatttgcc-taatccgaccatcag 12329666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 12391225 - 12391184
Alignment:
Q  5 cttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    |||||||||||||||||||  |||| ||||||||||||||||    
T  12391225 cttatcactttattatttgataaactatttggtacacttgcc 12391184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 26979736 - 26979703
Alignment:
Q  289 tgcacaagtgagataaatcttgcatcatgcacaa 322  Q
    |||||||||||||||||||||| |||||||||||    
T  26979736 tgcacaagtgagataaatcttgtatcatgcacaa 26979703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 601 - 650
Target Start/End: Complemental strand, 42710005 - 42709956
Alignment:
Q  601 acttaattaaaaaacttttgacaaagacattaaatagtttaaaatattaa 650  Q
    |||||||| | |||||||||||||||||||| | || |||||||||||||    
T  42710005 acttaattgagaaacttttgacaaagacattgactattttaaaatattaa 42709956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10917962 - 10917901
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||  |||||||||    
T  10917962 tctacttatcactttattatttggtaaacgatttggtacacttgcc-taatcgaaccatcagt 10917901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 12805945 - 12806004
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||    
T  12805945 tctacttatcactttattacttggtaaatgatttggtacacttgcc-taatccgaccatca 12806004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22349453 - 22349410
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttg 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  22349453 tctacttatcactttattatttggtaaacgatttggtacacttg 22349410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 19908349 - 19908292
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||| |||||||||||| |||||||||||||||||||| || ||||||||||||    
T  19908349 tacttatcattttattatttggtaaacgatttggtacacttgcaat-atccgaccatca 19908292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 5508377 - 5508321
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||    
T  5508377 acttatcactttattacttggcaaatgatttggtacacttgcc-taattcgaccatca 5508321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6289947 - 6289887
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||||||||||||||| |||| |||||||||| |||| ||||| |||||||||||||||    
T  6289947 tctacttatcactttattacttggtaaacgatttgatacatttgcc-taatccgaccatcag 6289887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21301962 - 21301917
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||    
T  21301962 tctacttatcactttattacttggtaaacgatttggtacacttgcc 21301917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 580 - 650
Target Start/End: Original strand, 33429089 - 33429159
Alignment:
Q  580 gtttttatcacatgacgataaacttaattaaaaaacttttgacaaagacattaaatagtttaaaatattaa 650  Q
    |||||| ||||||||||| | |||||||| |||||||||||| ||||| ||| | || |||||||||||||    
T  33429089 gtttttgtcacatgacgaaagacttaattgaaaaacttttgataaagatattgattattttaaaatattaa 33429159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 650
Target Start/End: Complemental strand, 1163493 - 1163424
Alignment:
Q  581 tttttatcacatgacgataaacttaattaaaaaacttttgacaaagacattaaatagtttaaaatattaa 650  Q
    ||||| ||||||||||| | |||||||| | |||||||||||||| |||| || || |||||||||||||    
T  1163493 tttttttcacatgacgagagacttaattgagaaacttttgacaaacacataaactattttaaaatattaa 1163424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10744946 - 10744901
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||||    
T  10744946 tctacttatcactttattacttggtaaacgatttggtaaacttgcc 10744901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21303409 - 21303461
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccg 54  Q
    ||||||||||| |||||||||||| |||||||||| |||||||| |||||||||    
T  21303409 tctacttatcattttattatttggtaaacgatttgatacacttg-cataatccg 21303461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12759431 - 12759371
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| |||| |||||||||||||| |  |||| ||||||||    
T  12759431 tctacttatcactttattacttggtaaacaatttggtacacttgtctaaatcagaccatca 12759371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11533030 - 11533073
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttg 44  Q
    |||||||||||||||||||||||| ||| | |||||||||||||    
T  11533030 tctacttatcactttattatttggtaaatgttttggtacacttg 11533073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16245784 - 16245827
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttg 44  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||    
T  16245784 tctacttatcactttattacttggtaaacgagttggtacacttg 16245827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 277 - 320
Target Start/End: Original strand, 35052456 - 35052499
Alignment:
Q  277 ccaattctataatgcacaagtgagataaatcttgcatcatgcac 320  Q
    ||||||||||| ||||||||||||| |||| |||||||||||||    
T  35052456 ccaattctatagtgcacaagtgagacaaattttgcatcatgcac 35052499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 3116476 - 3116518
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    |||||||||||||||| |||| |||| ||||||||||||||||    
T  3116476 acttatcactttattacttggtaaacaatttggtacacttgcc 3116518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 41508411 - 41508350
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    ||||| ||||||||||||| |||  ||||||||||||||||||||| |||||||  |||||||    
T  41508411 tctacctatcactttattacttgataaacgatttggtacacttgcc-taatccgcacatcagt 41508350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 821569 - 821606
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggta 38  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  821569 tctacttatcactttattacttggtaaacgatttggta 821606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 168353 - 168413
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||    
T  168353 tctacttatcactttattacttggtaaacgatttggtacacttgcc-taatctgaccatcag 168413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24904677 - 24904614
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc---ataatccgaccatca 61  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||   |||||||||||||||    
T  24904677 tctacttatcactttattatttggtaaatgatttggtacacttgcctatataatccgaccatca 24904614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 24209596 - 24209531
Alignment:
Q  75 tttaatactttcaaattgatatgcttagatgaatgcctaacttgatcaggatgttatcataattgt 140  Q
    |||||| |||||||| |||||| |||||||||||| ||||||| ||| |||||||| |||||||||    
T  24209596 tttaatgctttcaaactgatatacttagatgaatgtctaacttaatcgggatgttaacataattgt 24209531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 28276815 - 28276871
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||    
T  28276815 acttatcacttttttatttggtaaacgatttgatacacttgcc-taatccgaccatca 28276871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29382416 - 29382461
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||    
T  29382416 tctacttatcactttattacttggtaaacgatttggtacacttgcc 29382461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5850985 - 5850926
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| |||||||| |||||||||| | ||||||||||||||    
T  5850985 tctacttatcactttattacttggtaaacgattaggtacacttgac-taatccgaccatca 5850926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17101948 - 17102007
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| |||||||||| ||||||| |||| ||||||||||||    
T  17101948 tctacttatcactttattacttggtaaacgatttgatacactttccat-atccgaccatca 17102007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26008067 - 26008007
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||||  ||| |||||||||    
T  26008067 tctacttatcactttattacttggtaaatgatttggtacacttgcctaaattcgaccatca 26008007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14528193 - 14528131
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagtc 64  Q
    ||||| ||||||||||||| |||| ||||||||||| ||||||||| ||||||||| |||||||    
T  14528193 tctacgtatcactttattacttggtaaacgatttggcacacttgcc-taatccgactatcagtc 14528131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 30235419 - 30235362
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| |||||| |||||||    
T  30235419 tacttatcactttattacttggtaaacgattttgtacacttgcc-taatccaaccatca 30235362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30806552 - 30806611
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| ||   |||||||||| |||||||||| ||||||||||||||    
T  30806552 tctacttatcactttattacttaataaacgatttgatacacttgcc-taatccgaccatca 30806611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30783796 - 30783835
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtaca 40  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  30783796 tctacttatcactttattacttggtaaacgatttggtaca 30783835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 31288393 - 31288342
Alignment:
Q  10 cactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||| |||| |||||||||||||||||| ||  |||||||||||||    
T  31288393 cactttattacttggtaaacgatttggtacactttcctaaatccgaccatca 31288342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 13697896 - 13697847
Alignment:
Q  11 actttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  13697896 actttattaattggtaaacgatttggtacacttgcc-taattcgaccatca 13697847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 19786773 - 19786716
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||| ||||||||||| |||| ||||||||||||| ||||| | ||||||||||||||    
T  19786773 tacttgtcactttattacttggtaaacgatttggtatacttgtc-taatccgaccatca 19786716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24114337 - 24114382
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||| ||||||| |||| |||| ||||||||||||||||    
T  24114337 tctacttatcattttattacttggtaaacaatttggtacacttgcc 24114382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25182483 - 25182543
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||| |||||||||||||||| |||  ||||||| |||||| | |||||||||||||||    
T  25182483 tctacttgtcactttattatttggtaaataatttggtccacttgtc-taatccgaccatcag 25182543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 54904 - 54845
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||||    
T  54904 tctacttatcactttattacttggtaaacgatttggtacactttcc-taatccgaccatca 54845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48245 - 48309
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagtcct 66  Q
    ||||||||||||||||||| |||| |||||||||| |||| ||||||| |||||||||||| ||||    
T  48245 tctacttatcactttattacttggtaaacgatttgatacatttgccat-atccgaccatcactcct 48309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15544021 - 15544069
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccata 49  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  15544021 tctacttatcactttattacttggtaaacgatttggtacacttgccata 15544069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21988037 - 21988085
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccata 49  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  21988037 tctacttatcactttattatttggtaaaggatttggtacacttgccata 21988085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27117773 - 27117832
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||    
T  27117773 tctacttatcactttattacttggtaaacgatttggtaaacttgcc-taatccgaccatca 27117832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 18736296 - 18736354
Alignment:
Q  2 ctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||    
T  18736296 ctacttatcactttattacttgttaaacgatttggtacacttgccat-atccgaccatca 18736354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24306360 - 24306417
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccat 59  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||    
T  24306360 tctacttatcactttattacttggtaaacgacttggtacacttgcca-aatccgaccat 24306417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 25405687 - 25405737
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatcc 53  Q
    ||||||||||||||||| |||| |||||| |||||||||||||||||||||    
T  25405687 tacttatcactttattacttggtaaacgacttggtacacttgccataatcc 25405737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21449133 - 21449088
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||    
T  21449133 tctacttatcactttattacttggtaaacgatttggtacacttgcc 21449088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 23038069 - 23038125
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||    
T  23038069 acttatcactttattacttggtaaacgatttggtacacttgcc-taatccaaccatca 23038125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12208645 - 12208597
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccata 49  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  12208645 tctacttatcactttattacttggtaaacgatttagtacacttgccata 12208597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17610311 - 17610370
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||| ||| ||||||||||||    
T  17610311 tctacttataactttattacttggtaaacgatttggtacacttgtcat-atccgaccatca 17610370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17837561 - 17837502
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||| ||||||||| |||| |||| |||||||||||||||| ||||||||||||||    
T  17837561 tctacttataactttattacttggtaaacaatttggtacacttgcc-taatccgaccatca 17837502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26540939 - 26540880
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||  |||||||||||||    
T  26540939 tctactta-cactttattacttggtaaacgatttggtacacttgcctaaatccgaccatca 26540880  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 29242563 - 29242504
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||  |||| |||||||||||||||||| ||||||||||||    
T  29242563 tctacttatcactttattacttgataaacaatttggtacacttgccat-atccgaccatca 29242504  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 616 - 711
Target Start/End: Complemental strand, 6219698 - 6219603
Alignment:
Q  616 ttttgacaaagacattaaatagtttaaaatattaacataatcaaatattacttttagaatgacttacataaacataaatcaatttgatggtttact 711  Q
    |||||||||||||| | | || ||||||||||||| | ||||| | | || ||| ||||||||||| | | ||| |||||||||||||||||||||    
T  6219698 ttttgacaaagacagtgactaatttaaaatattaataaaatcatagactagtttaagaatgacttataaagacaaaaatcaatttgatggtttact 6219603  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 17359203 - 17359145
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagt 63  Q
    |||||||||||||||| |||| ||||||||||||||||||||| |||||||  |||||||    
T  17359203 acttatcactttattacttggtaaacgatttggtacacttgcc-taatccgcacatcagt 17359145  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 33712702 - 33712648
Alignment:
Q  6 ttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| ||| |||||||||||||||||  |||||||||||||    
T  33712702 ttatcactttattatttggtaaa-gatttggtacacttgcctaaatccgaccatca 33712648  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13345391 - 13345436
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| |||| ||||||||||||||||    
T  13345391 tctacttatcactttattacttggtaaacaatttggtacacttgcc 13345436  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 15813212 - 15813268
Alignment:
Q  4 acttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||  ||  ||||||||||||||||||||| ||||||||||||||    
T  15813212 acttatcactttattacatgataaacgatttggtacacttgcc-taatccgaccatca 15813268  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 22664250 - 22664205
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||    
T  22664250 tctacttatcactttattacttggtaaacgatttggtacatttgcc 22664205  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24281321 - 24281276
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||    
T  24281321 tctacttatcactttattacttggtaaacgatttggtacatttgcc 24281276  T

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Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32383053 - 32383098
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    |||| |||||||||||||| |||| |||||||||||||||||||||    
T  32383053 tctatttatcactttattacttggtaaacgatttggtacacttgcc 32383098  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3591708 - 3591767
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||| |||||||||||||| |||  ||||||||| ||||||||||| ||||||||||||||    
T  3591708 tctatttatcactttattacttgataaacgattttgtacacttgcc-taatccgaccatca 3591767  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9787934 - 9787993
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||||||||||||| |||  ||| ||||||||||||||||| |||||||| |||||    
T  9787934 tctacttatcactttattacttgctaaatgatttggtacacttgcc-taatccgatcatca 9787993  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 14779609 - 14779550
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    |||| ||||||| |||||| |||| ||| ||||||||||||||||||| ||||||||||||    
T  14779609 tctaattatcacattattacttggtaaatgatttggtacacttgccat-atccgaccatca 14779550  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 7790364 - 7790319
Alignment:
Q  605 aattaaaaaacttttgacaaagacattaaatagtttaaaatattaa 650  Q
    |||||||||||||||||||||||||  || || |||||||||||||    
T  7790364 aattaaaaaacttttgacaaagacaaaaattaatttaaaatattaa 7790319  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 16787781 - 16787841
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcag 62  Q
    ||||||||||||||||||| |||  |||||||||| | | |||||| |||||||||||||||    
T  16787781 tctacttatcactttattacttgataaacgatttgattcccttgcc-taatccgaccatcag 16787841  T

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Target: scaffold0622 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 772 - 710
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatcagtc 64  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||| ||||    
T  772 tctacttatcactttattacttggtaaacgatttggtacacttgcc-taatctgaccataagtc 710  T

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Target: scaffold0838 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2414 - 2371
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttg 44  Q
    |||||||||| ||||||||||||| |||||||||||||||||||    
T  2414 tctacttatccctttattatttggtaaacgatttggtacacttg 2371  T

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Target: scaffold0832 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2445 - 2402
Alignment:
Q  1 tctacttatcactttattatttggcaaacgatttggtacacttg 44  Q
    |||||||||| ||||||||||||| |||||||||||||||||||    
T  2445 tctacttatccctttattatttggtaaacgatttggtacacttg 2402  T

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Target: scaffold0032 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 25196 - 25244
Alignment:
Q  82 ctttcaaattgatatgcttagatgaatgcctaacttgatcaggatgtta 130  Q
    |||||||||  |||||||| |||| ||||||||||||||||||||||||    
T  25196 ctttcaaatgaatatgcttggatgtatgcctaacttgatcaggatgtta 25244  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 81530 - 81486
Alignment:
Q  2 ctacttatcactttattatttggcaaacgatttggtacacttgcc 46  Q
    ||||||||||||||||||||||| ||||||||| ||| |||||||    
T  81530 ctacttatcactttattatttggtaaacgatttcgtaaacttgcc 81486  T

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Target: scaffold0340 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 543 - 629
Target Start/End: Original strand, 10937 - 11023
Alignment:
Q  543 tttgtgaaaaatttctcaatttaatatttatttttacgtttttatcacatgacgataaacttaattaaaaaacttttgacaaagaca 629  Q
    ||||| |||| |||||||||| ||| | | ||| || |||||| ||||| ||||| | |||||||| |||||||||||| |||||||    
T  10937 tttgtcaaaagtttctcaattaaatttatgtttctatgtttttttcacacgacgagagacttaattgaaaaacttttgataaagaca 11023  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 12151 - 12093
Alignment:
Q  3 tacttatcactttattatttggcaaacgatttggtacacttgccataatccgaccatca 61  Q
    ||||||||| ||||||| |||| |||| ||||||||||||||||  |||||||| ||||    
T  12151 tacttatcagtttattacttggtaaacaatttggtacacttgcctaaatccgacaatca 12093  T

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