View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13420_low_11 (Length: 364)
Name: NF13420_low_11
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13420_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 36902876 - 36902985
Alignment:
| Q |
130 |
agagaagagagaaaaatctcatattcttagcaatacttttcgtattttgactaattctagtcgcttacaatatagaaatgactaaatgatttaagcatgc |
229 |
Q |
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| T |
36902876 |
agagaagagagaaaaatctcatattcttagcaatacttttcgtatttagactaattctagtcgcttacaacatagaaatgactaaatgatttaaccatgc |
36902975 |
T |
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| Q |
230 |
atcagattct |
239 |
Q |
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| T |
36902976 |
atcagattct |
36902985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 36902771 - 36902822
Alignment:
| Q |
11 |
cacagacgtgtaaatttaaatattacatgcagtaaatgtgaagaactttttt |
62 |
Q |
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| T |
36902771 |
cacagacgtgtaaatttaaatattacatgcagtaaatgtgaagaactttttt |
36902822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 106
Target Start/End: Original strand, 36902816 - 36902846
Alignment:
| Q |
76 |
cttttttctctacgaaataaatctcatattc |
106 |
Q |
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| T |
36902816 |
cttttttctctacgaaataaatctcatattc |
36902846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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