View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13420_low_12 (Length: 348)
Name: NF13420_low_12
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13420_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 24949664 - 24949325
Alignment:
| Q |
1 |
cgcgttcctcagatattgttcgaatgagatacgaccgattaagaagcatcggagggagagttcaaagtgttgtaggtgatcttgcaactcaaggagaaag |
100 |
Q |
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| T |
24949664 |
cgcgttcctcagatattgttcgaatgagatacgaccgattaagaagcattggagggagagttcaaagtgttgtaggtgatcttgcaactcaaggagaaag |
24949565 |
T |
|
| Q |
101 |
gtttcaaagtcttttaagttggagagatccaagggctacaacactttttgtaacattttgttttgttgctgctatgattctttatgttactccttttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24949564 |
gtttcaaagtcttttaagttggagagatccaagggctacaacactttttgtaacattttgttttgttgctgctatgattctttatgttactccttttcaa |
24949465 |
T |
|
| Q |
201 |
gttgtgttactaatcactggcttttatgttctgagacatcctagattcagacataaacttccatcagttcctcttaatttctttaggaggttacctgcta |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24949464 |
gttgtgttactaattactggcttttatgttctgagacatcctagattcagacagaaacttccatcagttcctcttaatttctttaggaggttacctgcta |
24949365 |
T |
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| Q |
301 |
gatcagatagcatgttatagatcatcattcatgatgatgt |
340 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
24949364 |
gatcagatagcatgttatagatcatcattcatgattatgt |
24949325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 36809755 - 36809669
Alignment:
| Q |
120 |
tggagagatccaagggctacaacactttttgtaacattttgttttgttgctgctatgattctttatgttactccttttcaagttgtg |
206 |
Q |
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|||||||||||||| ||||| |||||||||| ||| ||||| |||||||||| | |||||||| ||||| |||||||||||| |
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| T |
36809755 |
tggagagatccaagagctactgcactttttgtgctattctgtttgattgctgctattgtactttatgtgactccatttcaagttgtg |
36809669 |
T |
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