View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13420_low_3 (Length: 633)
Name: NF13420_low_3
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13420_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Original strand, 28730094 - 28730709
Alignment:
| Q |
1 |
tcatccacaagataatctctcaagaaaatctgtaaagactaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggataat |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28730094 |
tcatacacaagataatctc--aagaaaatctgtaaagactaaatccaca-------ttattaacgaactagttaagcaacatagagtatatatggataat |
28730184 |
T |
|
| Q |
101 |
agtgtgaactaactacaaattcagagttacaattcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattag |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28730185 |
agtgtgaattaactacaaattcagagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattag |
28730284 |
T |
|
| Q |
201 |
atgaacaacagtgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcaca |
300 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |
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| T |
28730285 |
atgaacaacggtgtaaacttattaactacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcaca |
28730384 |
T |
|
| Q |
301 |
ctcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
28730385 |
ctcacaggccatggtgatcttcaatctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagccaccacg |
28730484 |
T |
|
| Q |
401 |
ctcatcaagagcagagcaggtttcttccgtcgcctgaccagcagaatctgaaacagtagcagctctggctccgacacctgctccttccgatg-------- |
492 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28730485 |
cccatcaagagcagagcaggtttcttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacctgctccttccgatgctccttca |
28730584 |
T |
|
| Q |
493 |
-ctcctaagatagtatcataagcagccccaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcag |
591 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28730585 |
cctcctaagatagtatcataagcatccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcag |
28730684 |
T |
|
| Q |
592 |
caaacttcaccctaacatagttaat |
616 |
Q |
| |
|
||| ||||||||||||||||||||| |
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|
| T |
28730685 |
caaccttcaccctaacatagttaat |
28730709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 33078592 - 33078556
Alignment:
| Q |
201 |
atgaacaacagtgtaaacttattaacgacaaatttca |
237 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
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|
| T |
33078592 |
atgaacaacagtgtaaacttattaactacaaatttca |
33078556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 33078557 - 33078483
Alignment:
| Q |
254 |
cagagaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaat |
325 |
Q |
| |
|
||||||| |||||||| ||| |||||| |||||||| ||| |||| || |||||| ||||||||||||||||| |
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|
| T |
33078557 |
cagagaaagaagtaaaccgcgatcttcatcatcatcattgaagcatcgcagtcacagcccatggtgatcttcaat |
33078483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 20 - 616
Target Start/End: Original strand, 38120529 - 38121135
Alignment:
| Q |
20 |
tcaagaaaatctgtaaagactaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaactaactacaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |
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|
| T |
38120529 |
tcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagtt--ggataatagtgtgaattaactacaaa |
38120626 |
T |
|
| Q |
120 |
ttcagagttacaattcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaact |
219 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38120627 |
ttcaaagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaact |
38120726 |
T |
|
| Q |
220 |
tattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcat---catcgaaccatcacactcacaggccatggtg |
316 |
Q |
| |
|
||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| |||| ||||||| |||| |||||||||||||||||| |
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|
| T |
38120727 |
tattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtg |
38120826 |
T |
|
| Q |
317 |
atcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagagcagag |
416 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
38120827 |
atcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaggagcagag |
38120926 |
T |
|
| Q |
417 |
caggtttcttccgtcgcctgaccagcagaatctgaaacagtagcagctctggctccgacacctgctccttccgatg---------ctcctaagatagtat |
507 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
38120927 |
caggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtat |
38121026 |
T |
|
| Q |
508 |
cataagcagccccaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaacttcaccctaac |
607 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||| ||| || || || |
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|
| T |
38121027 |
cataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcac |
38121126 |
T |
|
| Q |
608 |
atagttaat |
616 |
Q |
| |
|
||||||||| |
|
|
| T |
38121127 |
atagttaat |
38121135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 212 - 616
Target Start/End: Complemental strand, 38609401 - 38608988
Alignment:
| Q |
212 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
311 |
Q |
| |
|
||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
38609401 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38609302 |
T |
|
| Q |
312 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagag |
411 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| || || ||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
38609301 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagag |
38609202 |
T |
|
| Q |
412 |
cagagcaggtttcttccgtcgcctgaccagcagaatctgaaacagtagcagctctggctccgacacctgctccttccgatg---------ctcctaagat |
502 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| | | ||| | |||| |||||| ||||||||||||||||| | ||||||| || |
|
|
| T |
38609201 |
cagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatat |
38609102 |
T |
|
| Q |
503 |
agtatcataagcagccccaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaacttcacc |
602 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| || |
|
|
| T |
38609101 |
agtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaact |
38609002 |
T |
|
| Q |
603 |
ctaacatagttaat |
616 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
38609001 |
ctcacatagttaat |
38608988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 212 - 616
Target Start/End: Complemental strand, 38794184 - 38793771
Alignment:
| Q |
212 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
311 |
Q |
| |
|
||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
38794184 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38794085 |
T |
|
| Q |
312 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagag |
411 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| || || ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38794084 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagag |
38793985 |
T |
|
| Q |
412 |
cagagcaggtttcttccgtcgcctgaccagcagaatctgaaacagtagcagctctggctccgacacctgctccttccgatg---------ctcctaagat |
502 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| | | ||| | |||| |||||| ||||||||||||||||| | ||||||| || |
|
|
| T |
38793984 |
cagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatat |
38793885 |
T |
|
| Q |
503 |
agtatcataagcagccccaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaacttcacc |
602 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| || |
|
|
| T |
38793884 |
agtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaact |
38793785 |
T |
|
| Q |
603 |
ctaacatagttaat |
616 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
38793784 |
ctcacatagttaat |
38793771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 257 - 366
Target Start/End: Complemental strand, 34592957 - 34592845
Alignment:
| Q |
257 |
agaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcata |
353 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
354 |
ggagacacacctg |
366 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34592857 |
ggagacacacctg |
34592845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 3928106 - 3928143
Alignment:
| Q |
142 |
caaagaagtgcagcacaaactaaaaagaactaagcaac |
179 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
3928106 |
caaagaagtgctgcacaaactaaaaagatctaagcaac |
3928143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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