View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13420_low_5 (Length: 507)
Name: NF13420_low_5
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13420_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 38943106 - 38942708
Alignment:
| Q |
1 |
caagactgttcccatacttggtcaccgtgtaaggtcgtcttttgatgaagtgtatttgcgaattgtatgtgcgaagaaaaccattgctcagctgactgat |
100 |
Q |
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| T |
38943106 |
caagactgttcccatacttgctccccgtgtaagttcgtcttttgatgaagtgttttagcga-ttgtatg--caaagaaaaccattgctcagctgactgat |
38943010 |
T |
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| Q |
101 |
atacctgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttatgaatatgactgtggttgggtg |
200 |
Q |
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| T |
38943009 |
atacctgacgatggaacttttattgtaagtgcaactgttaatggattggttgaaggaatttagtaggaatgagagttatgaatatgactgtggttgggtg |
38942910 |
T |
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| Q |
201 |
gttgattgaattgcagggtaatttggaacgggaagtgattgtgtacaactaaagggagatgagattattgtgatagtatgaattgttgaggttgttgtga |
300 |
Q |
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| T |
38942909 |
gttgattgaattgcagggtaatttggaatgggaagtgattgtgtacaactaaa-ggaggtgggattattgtggtagtatgaattgttgaggttgttgtca |
38942811 |
T |
|
| Q |
301 |
ttgtctattctttttactatgaagccatttcctgtgtgtgtagattcagttgagnnnnnnnngtagaagtagattcaggaaagttttttgaaaaggaaaa |
400 |
Q |
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| T |
38942810 |
ttgtctattctttttactctgaagccatttcctctgtgtgtagattcagttgagttttttaggtacaagtagattcaggaaagctttttgaaaaggaaaa |
38942711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 13723893 - 13724013
Alignment:
| Q |
231 |
ggaagtgattgtgtacaactaaagggagatgagattattgtg--atagtatgaattgttgaggttgttgtgattgtctattctttttactatgaagccat |
328 |
Q |
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| T |
13723893 |
ggaagtgattgtgttgagctaaaaggagatgaaattattgtagaattgtatgagctattgaggttgttaacattgtgtatgcttttttccaagaagccat |
13723992 |
T |
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| Q |
329 |
ttcctgtgtgtgtagattcag |
349 |
Q |
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| T |
13723993 |
ttcctgtgtttttagattcag |
13724013 |
T |
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