View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13420_low_6 (Length: 442)
Name: NF13420_low_6
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13420_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Original strand, 373743 - 374153
Alignment:
| Q |
14 |
atgaattatcagcaaaagagaaactacttcaacaacactaaaacgtattattgggatgaagcatagtcacataattcgtaattcgctttggtatgtggta |
113 |
Q |
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| T |
373743 |
atgaattatcagcaaaagagaaactacttcaacaacactaaaacgtattattgggatgaaccatagtcacatgattcgtaattcgctttggtatgtggta |
373842 |
T |
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| Q |
114 |
cgggtacgggttcgcgacataagaaaattcggcaagtcggttcttagtagtagtaccaattgagtatagtgtaagctattacgaacagacgtgtaccgaa |
213 |
Q |
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| T |
373843 |
ctggtacgggttcgcgacataagaaaatttggcaagtcagttcttagtagtagtaccaattgagtatagtgtaagctattacgaacagacgtgcaccgaa |
373942 |
T |
|
| Q |
214 |
gctccataccccggtatgtactgaatttttctcatgtcacataccgcgaacccgtacctatatcatgtaccaaaacgagttccgaattatgtgactatga |
313 |
Q |
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| T |
373943 |
gctccataccccggtatgtactgaatttttctcatgtcacataccgcgaacccgtacctatatcatgtaccaaaacaagttccgaattatgtgactatga |
374042 |
T |
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| Q |
314 |
tatcaagcatacaagaaatacaacagaaagacatccttgaagtaagagttatttgatacatgggggatttacttcatgagtgtcttcccacaatcaaatg |
413 |
Q |
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| T |
374043 |
tatcaagcatacaagaaatacaacagaaagacatccttgaagtaagagttatttgatacatgggggatttacttcatgagtgtcttcccacaatcaaatg |
374142 |
T |
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| Q |
414 |
ggagctcttat |
424 |
Q |
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| T |
374143 |
ggagctcttat |
374153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 27811430 - 27811388
Alignment:
| Q |
82 |
acataattcgtaattcgctttggtatgtggtacgggtacgggt |
124 |
Q |
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| T |
27811430 |
acataattcgtaattcgctttggtacgtggtacgggttcgggt |
27811388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 28043544 - 28043481
Alignment:
| Q |
70 |
tgaagcatagtcacataattcgtaattcgctttggtatgtggtacgggtacgggttcgcgacat |
133 |
Q |
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| T |
28043544 |
tgaaccatagtcacataatacgcaattcgcgttggtacgcggtacgggtacgggtacgcgacat |
28043481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 26637469 - 26637509
Alignment:
| Q |
75 |
catagtcacataattcgtaattcgctttggtatgtggtacg |
115 |
Q |
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| T |
26637469 |
catagtcacataattcgtaattcgcgttggtacgcggtacg |
26637509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 36440877 - 36440801
Alignment:
| Q |
236 |
gaatttttctcatgtcacataccgcgaacccgtacctatatcatgtaccaaaacgagttccgaattatgtgactatg |
312 |
Q |
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||||||||| ||||| | |||||||||||| |||| ||| | |||||||| |||| || ||||||||||||||||| |
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| T |
36440877 |
gaatttttcaaatgtcgcgtaccgcgaacccatacccataccgtgtaccaacacgaattacgaattatgtgactatg |
36440801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 14518908 - 14518951
Alignment:
| Q |
75 |
catagtcacataattcgtaattcgctttggtatgtggtacgggt |
118 |
Q |
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||||||| ||||||||||||| || ||||||||||||||||||| |
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| T |
14518908 |
catagtcgcataattcgtaatacgttttggtatgtggtacgggt |
14518951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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