View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13420_low_7 (Length: 401)
Name: NF13420_low_7
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13420_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 43411126 - 43410733
Alignment:
| Q |
1 |
cacatatgaaaatttttctggtgtattttgtcatcaacagacagtccatggctatgcattgagctgtttggttaaggtattttatctctttggattgcaa |
100 |
Q |
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| T |
43411126 |
cacatatgaaaaattttctggtgtattttgtcatcaacagacagtccatggctatgcattgagctgtttggttaaggtattttatctctttggattgtaa |
43411027 |
T |
|
| Q |
101 |
tcagaatcaacggacaatccatggccatgcattggattgtgatcataaaactaattctctct--ttcacttatgcattttttcttaacatgtacaaaatg |
198 |
Q |
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| T |
43411026 |
tcagaatcaacggacaatccatggccatgcattggattgtgatcataaaactaattttctctcgttcacttatgcattttttcttaaaatgtacaaaatg |
43410927 |
T |
|
| Q |
199 |
aacaaaaagctccgtaattatgtgacatagagagagagtaataattttcaatcaaatgtatgaaacgatgattacccgctcggtgtcccactggccaatg |
298 |
Q |
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| T |
43410926 |
aacaaaaagctcggtaattatgtgacatagagagagagtaataattttcaatcaaatgtatgaaacgatgattacccgctcggtgtctcaatggccaatg |
43410827 |
T |
|
| Q |
299 |
ttatataatattggcatcccaatagtgcacaaatggtgtctgtgtttgcacctctgtgtgggtttgcaatacttgtccctatctttgcctttgc |
392 |
Q |
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| T |
43410826 |
ttatataatattgacatcccaataatgcacaaacggtgttcgtgtttgtacctcggtgtgggtttgcaatacttgtccctatttttgcctttgc |
43410733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 34955117 - 34955069
Alignment:
| Q |
290 |
tggccaatgttatataatattggcatcccaatagtgcacaaatggtgtc |
338 |
Q |
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| T |
34955117 |
tggccaatgttatataacattggtatcccaatggtacacaagtggtgtc |
34955069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 37811135 - 37811087
Alignment:
| Q |
290 |
tggccaatgttatataatattggcatcccaatagtgcacaaatggtgtc |
338 |
Q |
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| T |
37811135 |
tggccaatgttatataacattggtatcccaatggtacacaagtggtgtc |
37811087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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