View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13420_low_9 (Length: 369)
Name: NF13420_low_9
Description: NF13420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13420_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 43 - 353
Target Start/End: Original strand, 44546253 - 44546563
Alignment:
| Q |
43 |
gagatgaaccctagaaagagaacatgggatcatgaaaaagatttatatgatttccttcttcttcacaagattaggtaccctaatactcaaaagaaaaagc |
142 |
Q |
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| T |
44546253 |
gagaagaaccctagaaagagaacatgggatcatgaaaaagatttatatgatttccttcttc---acaagattagggaccctaatactcaaaagaaaaagc |
44546349 |
T |
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| Q |
143 |
tctacaaccttc---ttcacaaattttacattaacgatccaaaagccgactcagacttgataaagatcacagatggtccatccagtattatacaatctca |
239 |
Q |
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| T |
44546350 |
tctacgaccttcttcttcacaaattttacattaacgatccaaaagccgactcagacttgataaagatcacagatggtccatccagtattatacaatctca |
44546449 |
T |
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| Q |
240 |
gctgcttcatcttcaggaacaaaacaacgacagcaacagcaatgaagaagaaaatgaacgacataggtttttaatgaagcatatgaagcgtcatggaaaa |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44546450 |
gctgcttcatcttcaggaacaaaacaacgacagcaacagcaatgaagaagaaaatgaacgacataggtttttattgaagcatatgaagcgtcatggaaaa |
44546549 |
T |
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| Q |
340 |
tctaatgtacttga |
353 |
Q |
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|||||||||||||| |
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| T |
44546550 |
tctaatgtacttga |
44546563 |
T |
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